Fixed readthedocs build and other minor issues (#458)

* Fixed readthedocs.yml file, so documentation for lfpy.readthedocs.io compiles

* Added encoding info to setup.py file, and changed np.alltrue -> np.all to remove DeprecationWarning when running tests

* Update to version 2.3.2

.readthedocs.yml

@@ -1,5 +1,10 @@
 version: 2
 
+build:
+  os: ubuntu-22.04
+  tools:
+    python: "miniconda3-4.7"  # Specify the Python version here
+
 sphinx:
   configuration: doc/conf.py
 
@@ -9,7 +14,6 @@ conda:
   environment: doc/environment.yml
 
 python:
-    version: "3"
     install:
         - method: pip
           path: .

LFPy/test/test_pointprocess.py

@@ -34,7 +34,7 @@ def test_PointProcess_00(self):
         cell = LFPy.Cell(morphology=os.path.join(LFPy.__path__[0], 'test',
                                                  'ball_and_sticks.hoc'))
         pp = LFPy.PointProcess(cell=cell, idx=0)
-        self.assertTrue(np.alltrue(
+        self.assertTrue(np.all(
             np.array([pp.x, pp.y, pp.z]) == cell.somapos))
         self.assertEqual(pp.idx, 0)
 

LFPy/version.py

@@ -1 +1 @@
-version = "2.3.1"
+version = "2.3.2"

doc/requirements.txt

@@ -2,3 +2,5 @@
 numpy>=1.8.2
 numpydoc
 sphinx
+m2r2
+sphinx_rtd_theme

setup.py

@@ -38,7 +38,7 @@
     ext_modules = []
 
 
-with open('README.md', 'rt') as file:
+with open('README.md', 'rt', encoding='UTF-8') as file:
     long_description = file.read()
 
 setup(