WC-Sandbox: Jupyter playground for whole-cell modeling

WC-Sandbox is a collection of Jupyter notebooks for learning about whole-cell modeling. The sandbox is available at https://sandbox.karrlab.org.

Installation

Install dependencies
- Pip >= 18.0
- Python >= 3.6
- Requirements for individual WC modeling tools. See An Introduction to Whole-Cell Modeling.

Install this package

Install the latest revision from GitHub

pip install git+https://github.com/KarrLab/wc_utils.git#egg=wc_utils
pip install git+https://github.com/KarrLab/wc_sandbox.git#egg=wc_sandbox

Please see the documentation.

The package is released under the MIT license.

This package was developed by the Karr Lab at the Icahn School of Medicine at Mount Sinai in New York, USA.

Please contact the Karr Lab with any questions or comments.

Name		Name	Last commit message	Last commit date
Latest commit History 65 Commits
.circleci		.circleci
docs		docs
tests		tests
wc_sandbox		wc_sandbox
.gitignore		.gitignore
.karr_lab_build_utils.yml		.karr_lab_build_utils.yml
Dockerfile		Dockerfile
LICENSE		LICENSE
MANIFEST.in		MANIFEST.in
README.md		README.md
app.json		app.json
deployment-instructions.sh		deployment-instructions.sh
heroku.yml		heroku.yml
requirements.optional.txt		requirements.optional.txt
requirements.txt		requirements.txt
setup.cfg		setup.cfg
setup.py		setup.py