This is the source code for an app that runs on the DNAnexus Platform.
To start, install the dx command line tool.
Log in with the dx login command. Then switch to your project
dx select <ProjectName>
Next, clone this repository and navigate to it.
git clone https://github.com/KarchinLab/open-cravat-dxapp.git
cd open-cravat-dxapp
Use dx build to build the applet.
dx build open-cravat
On the DNAnexus platform GUI, the applet will appear at the top level of your project's files.
To update the applet, add the --overwrite or -f flag to dx build.
dx build --overwrite open-cravat
To run the applet in the GUI, simply find the applet in your project's files and click it.
The applet can also be run from a terminal using dx run
For documentation of the app, and a detailed explanation of parameters, see the main app readme at open-cravat/Readme.md