Core scripts for LipidMatch, PolyMatch, and FluoroMatch
For LipidMatch, FluoroMatch, and PolyMatch users should directly download from innovativeomics.com/software for the latest stable release.
Developers can edit the main algorithms here on github as a team. Then the code needs to be integrated by placing the edited code in the correct directory from the downloaded distribution for innovativeomics.com, please contact us as well (jeremykoelmel@gmail.com) with major changes or project ideas, or discuss here.
Instructions for integrating the code into the software framework: Install FluoroMatch or LipidMatch from InnovativeOmics.com
If edited, put Modular.r into two directories (replace existing code):
LipidMatch-4.2\Flow\LipidMatch_Distribution
LipidMatch-4.2\FluoroMatch_Modular
Place any edited script files (genEIC.r, MS1Spectragen.r, Stats.R) into:
LipidMatch-4.2\Flow\LipidMatch_Distribution\LipidMatch_Libraries\Scripts
For the Modular version set
FLOW <- FALSE
csvInput <- FALSE #Alternatively you can keep this true and use csv inputs
ManuallyInputVariables <- FALSE
For the Flow version set
FLOW <- TRUE
Make sure to toggle the following parameters depending on your application, if both are FALSE it defaults to PFAS analysis:
Lipid <- TRUE
TWeen_pos <- FALSE
Make sure to follow all instructions for installing dependencies and package installation:
LipidMatch-4.2\FluoroMatch_Flow_Manual.docx
LipidMatch-4.2\FluoroMatch_Modular\FluoroMatch_Manual.docx
LipidMatch-4.2\FluoroMatch_Modular\Trouble_Shooting_Common_Issues.docx
If you have issues please contact Jeremy Koelmel at jeremykoelmel@gmail.com or open them up here on github
- Download or clone project
- Copy the contents of the root Scripts folder into:
- RapidTest/LipidMatch_Libraries/Scripts/