Demo datasets for the Spectre package

Demo datasets used for workflow examples and tutorials for the Spectre R package. Main page: https://immunedynamics.github.io/spectre/

Datasets:

demo.start.RData: flow cytometry data

demo.asinh.RData: flow cytometry data with arcsinh transformed values

demo.clustered.RData: flow cytometry data with arcsinh transformed values, clustering, UMAP coordinates, and annotated cell types

demo.batches.1.RData: flow cytometry data multiple batches

demo.exp.RData: summarised expression values per cluster

demo.sum.RData: summarised population data (cells per population per sample, etc)

Example:

In R, run load(url("https://github.com/ImmuneDynamics/data/blob/main/demo.clustered.RData?raw=TRUE"))

An object called demo.clustered should appear in your global environment.