SpectreMAP enables the analysis of high-dimensional imaging data, including data generated using Fluidigm’s Hyperion Imaging Mass Cytometer (IMC). Our current workflows support a basic (using CellProfiler) or comprehensive (using Ilastik) cell and region segmentation approach, followed by cellular and spatial analysis using FlowJo or R.
SpectreMAP has now been directly incorporated into Spectre. See our spatial analysis workflows on this page.