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Suggestion for formalizing F beta score #85

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shawntanzk opened this issue Feb 17, 2022 · 5 comments · May be fixed by #86
Open

Suggestion for formalizing F beta score #85

shawntanzk opened this issue Feb 17, 2022 · 5 comments · May be fixed by #86
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@shawntanzk
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Hi stato peeps,

We are trying to record confidence F scores for markers of cells in our ontology (PCL/BDSO) and was wondering if you had any suggestions on standard ways to annotate that statistic. Below is what we are trying represent:
Screenshot 2022-02-17 at 13 19 23

Thanks!

@proccaserra
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Hi @shawntanzk

Thanks for reaching out. A couple of things from your use case.

A question for you: could you give the reference of the book or paper your snippet comes from?

All the best

@proccaserra proccaserra self-assigned this Feb 18, 2022
@shawntanzk
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Hi @proccaserra thanks so much for your help!

I'll be honest, I'm not great with the mathematical side of stuff, tagging @yunzhang813 here who does the NS-forest for us, she can probably help with answering some of the questions :) thanks!

A question for you: could you give the reference of the book or paper your snippet comes from?

here's the paper: https://pubmed.ncbi.nlm.nih.gov/34088715/

@proccaserra
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Thx for the pointers @shawntanzk .

Adding some material to this issue as well:

@yunzhang813
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Hi, here to confirm that F-beta is calculated in the NS-Forest software using from sklearn.metrics import fbeta_score to compute the score. Beta (the weight) is set to 0.5.

@shawntanzk shawntanzk linked a pull request May 19, 2022 that will close this issue
@proccaserra
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@shawntanzk awesome ! thx for the PR. bear with me!

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3 participants