fixes issue #512

ISA-tools · Nov 12, 2023 · 034291f · 034291f
1 parent 2f489f5
commit 034291f
Showing 1 changed file with 9 additions and 2 deletions.
diff --git a/tests/model/test_utils.py b/tests/model/test_utils.py
@@ -1,5 +1,6 @@
 from unittest import TestCase
 
+from isatools.tests import utils
 from isatools.model.datafile import DataFile
 from isatools.model.sample import Sample
 from isatools.model.material import Material, Extract, LabeledExtract
@@ -14,9 +15,15 @@
     compute_checksum
 )
 
+import os
+
 
 class TestUtils(TestCase):
 
+    def setUp(self):
+        self._tab_data_dir = utils.TAB_DATA_DIR
+        # self._tmp_dir = tempfile.mkdtemp()
+
     def test_empty_process_sequence(self):
         graph = _build_assay_graph()
         self.assertTrue(len(graph.indexes.keys()) == 0)
@@ -106,12 +113,12 @@ def test_batch_create_assays(self):
 
     def test_checksum_md5(self):
         isa_data_file = DataFile(filename="EVHINN101.sff", label="RawDataFile")
-        updated_isa_data_file = compute_checksum("../data/tab/BII-S-3/", isa_data_file, "md5")
+        updated_isa_data_file = compute_checksum(os.path.join(self._tab_data_dir, "BII-S-3"), isa_data_file, "md5")
         self.assertEqual(updated_isa_data_file.comments[0].value, "md5")
         self.assertEqual(updated_isa_data_file.comments[1].value, "d41d8cd98f00b204e9800998ecf8427e")
 
     def test_checksum_sha2(self):
         isa_data_file = DataFile(filename="EVHINN101.sff", label="RawDataFile")
-        updated_isa_data_file = compute_checksum("../data/tab/BII-S-3/", isa_data_file, "sha256")
+        updated_isa_data_file = compute_checksum(os.path.join(self._tab_data_dir, "BII-S-3"), isa_data_file, "sha256")
         self.assertEqual(updated_isa_data_file.comments[0].value, "sha256")
         self.assertEqual(updated_isa_data_file.comments[1].value, "e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855")