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58 Open 142 Closed
58 Open 142 Closed
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Issues list

PEtab pipeline: Only compute sensitivities with respect to optimized parameters PEtab
#380 opened Dec 12, 2023 by dweindl
Converting result files to pypesto format enhancement Python
#349 opened Jul 12, 2021 by dweindl
1
@PaulJonasJost
Make HDF5 output more configurable C++ enhancement
#348 opened Jul 12, 2021 by dweindl
Support for forward sensitivities C++ enhancement
#343 opened Jun 15, 2021 by dweindl
Implement PEtab/PySB import
#325 opened Feb 21, 2021 by dweindl
gradient check CLI: allow specifying parameter index/ID C++ enhancement
#319 opened Feb 18, 2021 by dweindl
5 tasks
1
CI: extend benchmark collection tests to optimize, not only simulate with known parameters CI Python
#284 opened May 15, 2020 by dweindl
Add singularity definition file
#277 opened Apr 24, 2020 by dweindl
L1/elastic net regularisation
#274 opened Apr 18, 2020 by paulflang
1
Add gradient check for PEtab test suite models CI PEtab
#245 opened Mar 14, 2020 by dweindl
Save current parameter vector before cost function evaluation C++ enhancement
#228 opened Jan 21, 2020 by dweindl
add option to not copy parameter estimation input to result file C++ enhancement
#227 opened Jan 17, 2020 by dweindl
Verify optimal values reported by ipopt C++
#221 opened Dec 19, 2019 by dweindl
1
generateHDF5DataFileFromText.py takes ages Python
#219 opened Dec 18, 2019 by dweindl
Use docker credential helper in deploy action CI
#217 opened Dec 15, 2019 by dweindl
Cleanup and document python library enhancement Python
#213 opened Dec 13, 2019 by dweindl
Extend snakemake workflow for result visualization enhancement Python
#196 opened Oct 8, 2019 by dweindl
Add option to (not) write simulation results by workers C++ enhancement
#192 opened Jul 24, 2019 by dweindl
Add option to save llh gradients for each condition C++ enhancement
#191 opened Jul 24, 2019 by dweindl
During hierarchical optimization, don't compute sensitivities w.r.t. analytically computed parameters C++ enhancement
#190 opened Jun 28, 2019 by dweindl
Test hybrid MPI-OpenMP C++ enhancement
#188 opened Jun 20, 2019 by dweindl
Set version number in python package Python
#186 opened Jun 18, 2019 by dweindl
Test blaze for BLAS-like operations and handling of multidimensional arrays C++ enhancement
#184 opened Jun 2, 2019 by dweindl
Update example notebooks to create out of source artifacts
#179 opened May 31, 2019 by dweindl
Add contribution guide documentation Documentation related
#176 opened May 31, 2019 by dweindl
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