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@HiPCTProject

HiPCTProject

Code associated with hierarchical phase contrast tomography

HiP-CT Project

This organisation contains codes used internally within the HiP-CT project.

Where possible we've made these codes public in case any of it is useful to those external to the project. None of the code is designed to be general purpose or scientist-facing however.

For public-facing codes for working with HiP-CT data in the Human Organ Atlas, see https://github.com/HumanOrganAtlas.

Popular repositories

  1. Tomo_Recon Tomo_Recon Public archive

    MATLAB 6

  2. stack-to-chunk stack-to-chunk Public

    Convert stacks of images to chunked datasets

    Python 1 1

  3. rebin rebin Public

    Re-bin stacks of JPEG2000 images to reduce their filesize and resolution

    Python

  4. downsample-jp2s downsample-jp2s Public

    Script to create binned JPEG2000 datasets for HiP-CT data

    Python

  5. contrast-lims contrast-lims Public

    Script for calculating contrast limits for HiP-CT datasets

    Python

  6. hipct-reg hipct-reg Public

    Code to register regions of interest to full organ datasets

    Python

Repositories

Showing 8 of 8 repositories
  • hipct-reg Public

    Code to register regions of interest to full organ datasets

    Python 0 BSD-3-Clause 0 4 1 Updated May 17, 2024
  • rebin Public

    Re-bin stacks of JPEG2000 images to reduce their filesize and resolution

    Python 0 BSD-3-Clause 0 1 1 Updated May 13, 2024
  • stack-to-chunk Public

    Convert stacks of images to chunked datasets

    Python 1 BSD-3-Clause 1 0 4 Updated May 13, 2024
  • contrast-lims Public

    Script for calculating contrast limits for HiP-CT datasets

    Python 0 BSD-2-Clause 0 1 0 Updated May 13, 2024
  • downsample-jp2s Public

    Script to create binned JPEG2000 datasets for HiP-CT data

    Python 0 BSD-3-Clause 0 2 0 Updated Apr 19, 2024
  • data-speeds Public

    Comparing image file I/O

    Python 0 0 0 0 Updated Apr 6, 2024
  • .github Public
    0 0 0 0 Updated Mar 27, 2024
  • Tomo_Recon Public archive
    MATLAB 6 GPL-3.0 0 0 0 Updated Jul 6, 2023

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