Single-cell resolution view of the transcriptional landscape of developing Drosophila eye.

Radoslaw Kamil Ejsmont^1,2,3,✉, Grace Houser¹, Natalia Mora Garcia^1,2, Sara Fonseca Topp¹, Natalia Danda¹, Agnes Wong-Chung¹, Bassem A. Hassan^1,2,✉

¹ Institut du Cerveau et de la Moelle Epinière (ICM) - Hôpital Pitié-Salpêtrière, Sorbonne Université, Inserm, CNRS, Paris, France

² VIB Center for the Biology of Disease, VIB, Leuven, Belgium

³ Current address: Center for Research and Interdisciplinarity (CRI), Paris, France

^✉ Corresponding authors, e-mail: R.K.E radoslaw.ejsmont@cri-paris.org, B.A.H. bassem.hassan@icm-institute.org

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Now available as bioRxiv preprint: https://www.biorxiv.org/content/10.1101/763243v2

Abstract

Introduction

Results

Discussion

References

Acknowledgements

Author contributions

Methods

Supplementary material

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The manuscript is written in pandoc markdown. It can be rendered into GitHub Flavored Markdown with the following command:

pandoc -F pandoc-crossref -F pandoc-citeproc source.md -t gfm --template templates/default.gfm --wrap=none | sed 's/\!\[\*\*\(.*Figure .\) - \(.*\)\](\(.*\.png\))/§![\1](\3)§§<small>§§**\1 - \2§§<\/small>§§---§/' | tr '§' '\n' > manuscript.md

and into a PDF with the following command:

cat source.md | sed 's/s*\.png/.pdf/' | pandoc -F pandoc-crossref -F pandoc-citeproc --template templates/default.latex --wrap=none -o manuscript.pdf --pdf-engine=xelatex --from markdown+latex_macro -f markdown

Version for reviewing (with numbered lines and larger line spacing) can be generated using the following command:

cat source.md | sed 's/s*\.png/.pdf/' | pandoc -F pandoc-crossref -F pandoc-citeproc --template templates/review.latex --wrap=none -o manuscript-review.pdf --pdf-engine=xelatex --from markdown+latex_macro -f markdown

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This is a repository for HassanLab publication from RDN-WDP Project. Image processing software used in this research can be found in RDN-WDP repository. Data mining and postprocessing scripts can be found in RDN-WDP-Python repository. Raw data is posted in RDN-WDP-Data repository.

We decided to write this paper on GitHub with belief that open science also means transparency in how scientific stories are put together and published. If you found this project interesting and would like to contribute, or if you found an error or a bug in the text, data or associated software, drop me a line at radoslaw.ejsmont@icm-institute.org or create a pull request.

We hope that our openness and transparency would not be abused #dontscoopus.

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The contents of this repository as well as the associated data (RDN-WDP-Data) is released under Creative Commons Attribution 4.0 (CC-BY-4.0) license with restriction on scientific publishing (see below). Software from RDN-WDP, RDN-WDP-Python is licensed under MIT license with restriction on scientific publishing (see below).

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The above supplement to the licenses will be revoked once our paper is accepted for publication.