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70 Open 35 Closed
70 Open 35 Closed
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Issues list

chromVAR installation error
#112 opened Feb 28, 2024 by JasonJiangs
1
filterpeaks error
#111 opened Feb 16, 2024 by woooowonjin
Error addGCBias: trying to load regions beyond the boundaries of non-circular sequence "chr13"
#110 opened Feb 10, 2024 by massonix
1
Error in .local(x, na.rm, dims, ...) : object 'R_dense_rowSums' not found
#109 opened Jan 19, 2024 by Chhiring-Lama
1
Issue on chromVAR installation
#108 opened Jan 4, 2024 by ScienceComputing
1
filterPeaks error
#104 opened Mar 27, 2023 by alkurowska
addGCBias Error in value[[3L]](cond) - truncaded file
#102 opened Oct 12, 2022 by artsvendsen
Gene name
#101 opened Aug 25, 2022 by tiffanyformosa
issue of installing chromVAR
#99 opened Jun 24, 2022 by BenxiaHu
chromvar from signac wrapper is stuck (not progressing)
#98 opened Apr 28, 2022 by Dena2021
2
Question about comparing different samples' TF deviation score
#97 opened Mar 30, 2022 by tianchen2019
question on background peak selection
#96 opened Mar 6, 2022 by q226
RunChromVAR() error when computing deviations from background
#95 opened Feb 17, 2022 by annaestevecodina
Error in counts_check(object) : ncol(object) > 1
#93 opened Dec 7, 2021 by c2b2pss
4
Error filtering the sample
#92 opened Dec 3, 2021 by Chhiring-Lama
Cann't install chromVAR successfully on Linux
#91 opened Jun 4, 2021 by whui2bioinformatics
3
getCounts error
#90 opened Feb 23, 2021 by jf292
2
cisbp human_pwms_v2
#89 opened Dec 20, 2020 by Dragonlongzhilin
Question: How to see the code of functions like '_chromVAR_bg_sample_helper' ?
#88 opened Nov 26, 2020 by paolacornejo
Error: object 'elementLengths' is not exported by 'namespace:S4Vectors'
#87 opened Nov 10, 2020 by fizwit
How to convert RangedSummarizedExperiment object to a SummarizedExperiment object?
#85 opened Oct 21, 2020 by singletrips
Merged chromVAR analysis Question
#83 opened Oct 14, 2020 by sylestiel
chromVAR computeDeviations error:Error in isVirtualExt(exti) :
#82 opened Oct 13, 2020 by zhaoliyang0429
5
Choice of Peak files to use in chromVAR analysis
#81 opened Oct 5, 2020 by sylestiel
2
Generating a Variability Plot of a handful of motifs
#80 opened Sep 30, 2020 by sylestiel
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