Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Merge branch 'gamma' to change NFR fit to be based on gamma distribut…
…ion rather than exponential distribution. This is more robust and corresponds better with observed distributions.
- Loading branch information
Showing
7 changed files
with
243,212 additions
and
21 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,8 +1,14 @@ | ||
|
||
Example files to test out functions | ||
#This folder contains Example files to test out functions | ||
|
||
#example.bam created by intersecting a bam file with example.slopped.bed (which has 1000bp flank on each side of example.bed) | ||
|
||
|
||
#To test out nucleoatac installation, try: | ||
|
||
nucleoatac run --bed example.bed --bam example.bam --fasta sacCer3.fa --out test_example | ||
|
||
|
||
example.bam created by intersecting a bam file with example.slopped.bed (which has 1000bp flank on each side of example.bed) | ||
|
||
example.Scores.bw has scores for ranges in example.slopped.bed | ||
|
||
|
Large diffs are not rendered by default.
Oops, something went wrong.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,17 @@ | ||
chrI 230218 6 50 51 | ||
chrII 813184 234836 50 51 | ||
chrIII 316620 1064292 50 51 | ||
chrIV 1531933 1387252 50 51 | ||
chrV 576874 2949830 50 51 | ||
chrVI 270161 3538249 50 51 | ||
chrVII 1090940 3813822 50 51 | ||
chrVIII 562643 4926590 50 51 | ||
chrIX 439888 5500493 50 51 | ||
chrX 745751 5949185 50 51 | ||
chrXI 666816 6709859 50 51 | ||
chrXII 1078177 7390020 50 51 | ||
chrXIII 924431 8489770 50 51 | ||
chrXIV 784333 9432698 50 51 | ||
chrXV 1091291 10232725 50 51 | ||
chrXVI 948066 11345850 50 51 | ||
chrM 85779 12312884 50 51 |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters