Error in plotFootprints(seFoot = seFoot, ArchRProj = projHeme, normMethod = "Subtract", : unused argument (useNames = TRUE)

[ttchen0714]

Hi,

I have trouble running an plotFootprints method.
Here is code:
plotFootprints(
seFoot = seFoot,
ArchRProj = projHeme,
normMethod = "Subtract",
plotName = "Footprints-Subtract-Bias",
addDOC = FALSE,
useNames = TRUE,
smoothWindow = 5
)
Error in plotFootprints(seFoot = seFoot, ArchRProj = projHeme, normMethod = "Subtract", :
unused argument (useNames = TRUE)
Here is log:
ArchR-plotFootprints-1807db156cc380-Date-2024-04-16_Time-16-52-19.log
I have tried:
1, install matrixStats version 1.1.0, but its still not working 2, BiocManager::install(version = "3.18"), but I got "Error: Bioconductor version '3.18' requires R version '4.3'; use version = '3.16'`
with R version 4.2; see https://bioconductor.org/install"
How can I fix this error?

[rcorces]

Hi @ttchen0714! Thanks for using ArchR! Lately, it has been very challenging for me to keep up with maintenance of this package and all of my other
responsibilities as a PI. I have not been responding to issue posts and I have not been pushing updates to the software. We are actively searching to hire
a computational biologist to continue to develop and maintain ArchR and related tools. If you know someone who might be a good fit, please let us know!
In the meantime, your issue will likely go without a reply. Most issues with ArchR right not relate to compatibility. Try reverting to R 4.1 and Bioconductor 3.15.
Newer versions of Seurat and Matrix also are causing issues. Sorry for not being able to provide active support for this package at this time.