Discussions

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  scanning peaks for transcription binding sites

  rojinsafavi asked Mar 7, 2021 in Questions / Documentation · Answered

  

  

  

  

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  Error: addDoubletScores about ggplot2

  yuyuyuto001 asked Feb 29, 2024 in Questions / Documentation · Unanswered

  

  

  

  

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  speed up addClusters

  limiao20 started May 27, 2024 in General

  

  

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  Can Macs3 be used to call peaks?

  amderogatis asked Jan 9, 2024 in Questions / Documentation · Unanswered

  

  

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  Error in addGeneExpressionMatrix in ArchR 1.0.3

  rlawltn9718 asked Oct 24, 2023 in Questions / Documentation · Closed · Unanswered

  

  

  

  

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  marker peaks track changed each time when using plotBrowserTrack

  jinbufan asked Aug 19, 2023 in Questions / Documentation · Closed · Unanswered

  

  

  

  

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  Estimated number of cells vs ArcR detection

  bug Something isn't working

  e-arslan asked Oct 31, 2021 in Questions / Documentation · Answered

  

  

  

  

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  how to correct install chormVAR packages

  LilyTian-github started Apr 27, 2024 in General

  

  

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  ArchR Combined Dims vs ArchR ATAC Single Nuclear Integration

  hira-anis started Apr 26, 2024 in General

  

  

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  Peak2Gene links limited to one gene

  NoemieL asked Jun 10, 2022 in Questions / Documentation · Unanswered

  

  

  

  

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  How to normalize the peak matrix

  xmliu01 asked Apr 22, 2024 in Questions / Documentation · Unanswered

  

  

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  Error running on cluster server

  eblchen started Apr 22, 2024 in General

  

  

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  ERROR Found in .addGeneScoreMat TmpGS for PBMC

  zcaiwei asked Apr 20, 2024 in Questions / Documentation · Unanswered

  

  

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  treatment vs control pairwise analysis ArchR

  cswoboda asked Apr 16, 2021 in Questions / Documentation · Answered

  

  

  

  

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  error during addGeneIntegrationMatrix with Seurat object

  kinako0130 asked Nov 1, 2023 in Questions / Documentation · Unanswered

  

  

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  simpleError in allLSI[cn, , drop = FALSE]: subscript out of bounds

  wshands started Jul 23, 2021 in General

  

  

  

  

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  filter nucleosome fragments

  Aya-Balbaa asked Apr 5, 2024 in Questions / Documentation · Unanswered

  

  

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  Averaging chromVar deviations across clusters

  jfouyang started Apr 3, 2024 in General

  

  

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  ID deviant TF motifs question

  pseudacriscrucifer asked Jan 11, 2024 in Questions / Documentation · Unanswered

  

  

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  addGroupCoverages based on each single cell

  travilucas asked Mar 30, 2024 in Questions / Documentation · Unanswered

  

  

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  Paired Multiome samples

  icenzano asked Mar 28, 2024 in Questions / Documentation · Unanswered

  

  

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  T2T Genome

  fansalon started Mar 20, 2024 in Feature Requests

  

  

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  Sequence of running addClusters() and addUMAP() functions

  sylestiel started Dec 7, 2022 in General

  

  

  

  

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  Multiome Processing: Cannot add Combined Clusters

  tawaunl asked Nov 30, 2023 in Questions / Documentation · Unanswered

  

  

  

  

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  Error with addGeneIntegrationMatrix

  Bioanya asked Mar 14, 2024 in Questions / Documentation · Unanswered

  

  

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