Islander

This repository is the official implementation of paper: “Metric Mirages in Cell Embeddings”.

Citation

@article {Islander,
	author = {Hanchen Wang and Jure Leskovec and Aviv Regev},
	title = {Metric Mirages in Cell Embeddings},
	doi = {10.1101/2024.04.02.587824},
	publisher = {Cold Spring Harbor Laboratory},
	URL = {https://www.biorxiv.org/content/early/2024/04/02/2024.04.02.587824}
	journal = {bioRxiv},
	year = {2024},
}

Usage

We include scripts and codes to reproduce all the results, see scripts folder. We use conda to set up the environment:

conda env create -f env.yml