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Issues: Gaius-Augustus/BRAKER

ERROR No query file specified
#446 opened Dec 2, 2021 by jonnyPizza
Open 9
BRAKER on Conda Cloud
#22 opened Feb 15, 2019 by LironShv
Open 32
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104 Open 654 Closed
104 Open 654 Closed
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Issues list

Bam files overwriting each other
#832 opened May 24, 2024 by Tsaranoga
2
Failed to execute in braker.pl line 2343
#831 opened May 23, 2024 by ala98412
Using preprocessed (clusteredaligned) PB Iso-Seq data with protein data?
#830 opened May 23, 2024 by carla-hazelf
Braker3 optimize_augustus.pl process does not terminate
#829 opened May 21, 2024 by kataksk
2
Issue with filterGenesIn_mRNAname.pl when running BRAKER with singularity
#828 opened May 18, 2024 by cvargas88
3
large differences in the number of genes predicted from different varieties of the same species
#826 opened May 15, 2024 by ChuanzhengWei
4
GeneMark-ETP didn't receive enough evidence from the input data
#821 opened May 8, 2024 by RezwanCAAS
4
braker3_lr threads
#820 opened May 8, 2024 by danielwood1992
@tomasbruna @KatharinaHoff
13
The ERROR in the file/datapool/home/yangzc/soft/pacbio/BRAKER 3.0.8 / scripts/BRAKER. The details of the pl at line 5414
#819 opened May 7, 2024 by Somnous1998
@alexlomsadze
best_by_compleasm.py unable to find compleasm.py
#818 opened May 2, 2024 by SAMtoBAM
@KatharinaHoff
1
errors-optimize_augustus.stderr
#816 opened May 2, 2024 by enriquepola1996
7
Using OrthoDB proteins and functional annotation
#815 opened Apr 29, 2024 by enriquepola1996
@KatharinaHoff
2
augustus.hints.gtf has 25k genes more than braker.gtf question Further information is requested
#813 opened Apr 24, 2024 by smallfishcui
@KatharinaHoff
1
How to use MakeHub output with UCSC Genome Browser
#810 opened Apr 22, 2024 by yzliu01
1
Docker Braker3 with example data: ERROR in file /opt/BRAKER/scripts/braker.pl at line 1238
#808 opened Apr 19, 2024 by yzliu01
@alexlomsadze @KatharinaHoff
2
Unnecessary compleasm failure alert
#806 opened Apr 18, 2024 by juliadouglasf
@KatharinaHoff
2
Queries on RNA-seq and Isoseq data in braker
#804 opened Apr 15, 2024 by lidachuis
@KatharinaHoff
7
Any suggestions for running an array job for Braker?
#803 opened Apr 14, 2024 by lw78943
@KatharinaHoff
6
HISAT alignment, sam, bam, sorted.bam steps enhancement New feature or request
#797 opened Apr 4, 2024 by SAMtoBAM
1
Merging exons to genes question Further information is requested
#795 opened Apr 4, 2024 by RonOLab
@KatharinaHoff
3
How to determine genes by scaffold ? question Further information is requested
#794 opened Apr 2, 2024 by emmafg
@KatharinaHoff
1
Failed at optimize_augutus.pl bug Something isn't working
#790 opened Mar 24, 2024 by kwantn
@MarioStanke @KatharinaHoff
1
Prothint - Error: Inflate error question Further information is requested
#789 opened Mar 23, 2024 by tanpham15
@alexlomsadze
1
Restricting introns to RNA seq support question Further information is requested
#787 opened Mar 20, 2024 by allind
@KatharinaHoff
1
BRAKER with bam files and external proteins question Further information is requested
#786 opened Mar 20, 2024 by enriquepola1996
@KatharinaHoff
2
ProTip! Exclude everything labeled bug with -label:bug.