EpiTxDb.Hs.hg38

Installation

The current version of the EpiTxDb.Hs.hg38 package is available from Bioconductor.

Github

remotes::install_github("FelixErnst/EpiTxDb.Hs.hg38")
#
library(EpiTxDb.Hs.hg38)

Bioconductor

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("EpiTxDb.Hs.hg38")
library(EpiTxDb.Hs.hg38)

Introduction

Literature

• Jia-Jia Xuan, Wen-Ju Sun, Ke-Ren Zhou, Shun Liu, Peng-Hui Lin, Ling-Ling Zheng, Liang-Hu Qu, Jian-Hua Yang (2017): "RMBase v2.0: Deciphering the Map of RNA Modifications from Epitranscriptome Sequencing Data." Nucleic Acids Research, Volume 46, Issue D1, 4 January 2018, Pages D327–D334. doi:10.1093/nar/gkx934

• Wen-Ju Sun, Jun-Hao Li, Shun Liu, Jie Wu, Hui Zhou, Liang-Hu Qu, Jian-Hua Yang (2018): "RMBase: a resource for decoding the landscape of RNA modifications from high-throughput sequencing data", Nucleic Acids Research, Volume 44, Issue D1, 4 January 2016, Pages D259–D265. doi:10.1093/nar/gkv1036.

• Jühling, Frank; Mörl, Mario; Hartmann, Roland K.; Sprinzl, Mathias; Stadler, Peter F.; Pütz, Joern (2009): "TRNAdb 2009: Compilation of tRNA Sequences and tRNA Genes." Nucleic Acids Research 37 (suppl_1): D159–D162. doi:10.1093/nar/gkn772.

• Sprinzl, Mathias; Vassilenko, Konstantin S. (2005): "Compilation of tRNA Sequences and Sequences of tRNA Genes." Nucleic Acids Research 33 (suppl_1): D139–D140. doi:10.1093/nar/gki012.