Popular repositories

1. BatchConvert BatchConvert Public

   A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.

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2. ome_zarr_pyramid ome_zarr_pyramid Public

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3. OME_Zarr_Tools OME_Zarr_Tools Public

   Course materials for the practical on the Defragmentation Training School 2 - Porto, 8-12 May 2023

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4. Rclone-BIA Rclone-BIA Public

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5. PatternFileGenerator PatternFileGenerator Public

   Tool to generate a pattern file under the name "new.pattern", which can be used by bioformats to concatenate multiple files into a hyperstack.

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6. Data Data Public

   Example data that can be used to test tools.