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@ESR-NZ

Institute of Environmental Science and Research

ESR is New Zealand’s Crown Research Institute that specialises in science relating to people and communities.

Popular repositories

  1. human_genomics_pipeline human_genomics_pipeline Public

    A Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.

    Python 28 21

  2. covid_in_wastewater covid_in_wastewater Public

    Quantitative data about how much SARS-CoV2 virus is found in New Zealand's wastewater

    15 5

  3. NZ_COVID19_Data NZ_COVID19_Data Public

    12 5

  4. nz-sars-cov2-variants nz-sars-cov2-variants Public

    Data on prevalence of variants of concern in Aotearoa New Zealand

    8 5

  5. vcf_annotation_pipeline vcf_annotation_pipeline Public

    A Snakemake workflow to filter, annotate and prepare variant call format (VCF) data for scout using GATK4, SnpSift, VEP and genmod. Designed to be used after human_genomics_pipeline.

    Python 6 4

  6. NZ_SARS-CoV-2_genomics NZ_SARS-CoV-2_genomics Public

    Shell 5 2

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