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78 Open 226 Closed
78 Open 226 Closed
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Issues list

build_genome_sh did not finish running
#440 opened Mar 26, 2024 by Glinland
Discrepancy between signal p-value and fold change bigwig tracks around the open regions
#439 opened Mar 15, 2024 by AayushGrover
If the pipeline can be used when data is from other platforms (eg: DNBSEQ-G400).
#438 opened Mar 7, 2024 by lillianj97
1
bam files with replicates
#437 opened Feb 26, 2024 by moshe-olshansky
1
Add --ntasks-per-node or --exclusive option for your multi-process jobs.
#434 opened Jan 10, 2024 by feather-W
Failed on fastqs having identical filename but different path
#431 opened Nov 3, 2023 by yunhailuo
3
The pipeline stalled at "chip.read_genome_tsv" for local backend
#429 opened Sep 7, 2023 by erhei01
2
Memory Saving: too many large files?
#428 opened Sep 7, 2023 by Rafaelsoler13
--read-len selection
#427 opened Sep 1, 2023 by songxh1996
two replicates and the combined have different signal
#426 opened Aug 28, 2023 by HYan-lei
Invalid MEMLIMIT unit value with LSF jobs on Linux
#425 opened Aug 22, 2023 by skoplev
Encode-atac-seq-pipeline environment can't be found?
#423 opened Aug 18, 2023 by riteshkc
More than 10 replicates
#422 opened Aug 12, 2023 by LinearParadox
3
6 days stuck on task=atac.read_genome_tsv:-1, retry=0, status=Running
#421 opened Aug 7, 2023 by matosmr
Unable to run the pipeline. invalid jar file error
#420 opened Jun 22, 2023 by Shashankti
3
Help with running the pipeline
#419 opened Jun 7, 2023 by Chrisdoan9
1
Reuse the same files in case of error.
#418 opened Jun 2, 2023 by Rafaelsoler13
How are DNAse-seq data processed with this pipeline?
#417 opened May 11, 2023 by sufyazi
How are mitochondrial reads aligned?
#416 opened May 9, 2023 by imk1
1
Finished parsing without consuming all tokens
#415 opened May 9, 2023 by LI-Qinyao
1
Build genome database for your own genome and
#414 opened Apr 28, 2023 by Rafaelsoler13
6
Interpreting result files and selecting files for visualization and DAR analysis
#413 opened Apr 27, 2023 by Rafaelsoler13
4
What should I cite
#412 opened Apr 27, 2023 by Al-Murphy
Multi-architecture docker image
#410 opened Apr 24, 2023 by jwtobias
pipeline because javax.net.ssl.SSLException failed
#409 opened Mar 31, 2023 by sjh996
1
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