The DivSeek Canada Portal is a web-based platform to implement association genetics workflows supporting plant breeding and crop research focusing on large scale plant genetic resources / crop genotype-phenotype data sets whose access is brokered / managed by the project.
The first iteration of the platform is funded under a Genome Canada Project with co-funding from other partners.
| Service | Address |
|---|---|
| Galaxy | :8200 |
| Tripal (/tripal) | :8200/tripal |
| Apollo (through Galaxy, /apollo) | :8200/apollo |
| Chado JBrowse Connector | :8200/jbrowse/ |
| PostgREST | :8200/postgrest |
| PostGraphQL GraphiQL interface | :8200/graphiql |
| PgAdmin4 | :8201/ |
| Chado PostGraphQL Connector | :8200/jbrowse_graphql/ |
| Service | Username | Password |
|---|---|---|
| Galaxy | admin@galaxy.org | admin |
| Tripal | admin | changeme |
| Apollo | admin@local.host | password |
The Apollo account is only used internally by the Galaxy tools. You should be automatically logged in with your Galaxy account when connecting to Apollo (thanks to gx-cookie-proxy).
This docker-compose.yml depends on a large number of containers. We link some
build status images here for developer convenience
| Image | Status |
|---|---|
| galaxy | |
| postgrest | |
| postgraphql |  |
| chado-jb-connector | |
| chado | |
| tripal | |
| gx-cookie-proxy |
Each Docker image can be configured to fit your needs. You should consult the documentation of each image, in particular:
Galaxy Docker image documentation
Tripal Docker image documentation
Chado Docker image documentation
Apollo Docker image documentation
GPLv3
This material is based upon work supported by the National Science Foundation under Grant Number (Award 1565146)