sequenceVisor is a basic TkInter based interface to visualize DNA sequence allignments from .fasta files, along with an approximate saturation of each of them, and a consensus sequence. Here is an example of an output with a clear allignment between different species.
- Install Python (any current version will do, since they come with TkInter pre-installed).
- Install the
pandasmodule. - Clone the repository into your locale.
To use sequenceVisor, it should be noted that your .fasta file must have the following format:
>Header
<sequence>
>Header
<sequence>
...
If in that format, just go into the script's directory and type in the following:
python sequence_visualizer.py <fasta_file> <display_mode> <font_size>
There are currently 4 different display modes, which you can check by just running the program without additional arguments.
python sequence_visualizer.py
- Diego Linares - Grupo BITLAB
Estancia en la Universidad de Málaga (UMA)