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Issues list

( AC / NUM_MERGED_SVS ) < 25
#149 opened Mar 28, 2024 by weizhu365
vcf_merge for SV
#148 opened Mar 25, 2024 by JoannaTan
Is it possible to call STRs with graphtyper?
#147 opened Mar 20, 2024 by scienception
In the genotype_sv result, the REF filed is N, and the ALT filed is not a sequence.
#146 opened Jan 24, 2024 by tanger-code
Graphtyper for calling human X-chromosome variants
#145 opened Jan 17, 2024 by Sirtx
REF in VCF file is N
#144 opened Dec 4, 2023 by pingxinxing
Coordinates must be > 0
#143 opened Nov 14, 2023 by carolinapinapaez
1
Genotype outputs all sites
#142 opened Nov 14, 2023 by lihaicheng7003
4
genotype wrong
#141 opened Nov 14, 2023 by lihaicheng7003
4
killed by the cgroup out-of-memory handler
#140 opened Nov 1, 2023 by zhachengwan
1
why SVSIZE=number+
#139 opened Oct 24, 2023 by jingydz
2
Not all Svimmer INS/DEL/DUP are genotyped by grapthyper as expected
#133 opened Aug 18, 2023 by jjfarrell
2
Failing to produce calls for same samples
#132 opened Aug 7, 2023 by buchanri
segment fault when genotyping sv
#131 opened Jul 7, 2023 by dodudoduding
segment fault when genotyping sv
#130 opened Jul 7, 2023 by dodudoduding
Genotyping of variants resulted from multi-sample Mutect2 (question)
#129 opened Jun 4, 2023 by mkyriak
Graphtyper may introduce overlapped SVs in one individual
#128 opened May 18, 2023 by jxcao98
All BNDs have no FORMAT:FT
#127 opened Apr 10, 2023 by tgong1
6
Compiling graphtyper. Problem with include(-I) paths when compiling. /usr/include is ignored.
#126 opened Mar 3, 2023 by lindenb
1
All chromosomes except chromosome 1 are LowPratio on the AGGREGATED model for DEL
#124 opened Feb 21, 2023 by YiBenqiu
use clang++ make, fatal error: redefinition of 'this_compile_arch'
#123 opened Feb 3, 2023 by liuyong201811
1
LargeSVsize Filter; PASS?
#122 opened Jan 27, 2023 by mplanasfelix
Call SVs by genome assemblies, and genotyped in WGS population
#121 opened Jan 13, 2023 by QianghuiZhu
vcf_operations.cpp:525 Sample names are not unique
#118 opened Nov 9, 2022 by xuefenfei712
1
SV in input VCF missed in graphtyper output VCF
#116 opened Oct 19, 2022 by tgong1
2
ProTip! Follow long discussions with comments:>50.