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56 Open 28 Closed
56 Open 28 Closed
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Issues list

Discrepancies Between matched Single-cell and Bulk Transcriptome Samples
#86 opened May 24, 2024 by Rui-Jing
Example about Computing z-scores of signature genes for Z of the cell type of interest.
#85 opened May 15, 2024 by 1667857557
3
How much memory consumed per core?
#84 opened May 7, 2024 by Pentayouth
1
I just want to quantify the various cell types within T cells, is this feasible?
#83 opened May 6, 2024 by M-jk22
1
Final Theta of cell state
#82 opened May 1, 2024 by RoyEHanna
1
library size normalization of inferred counts?
#77 opened Feb 6, 2024 by vravik
1
Can BayesPrism be used to deconvolute normal and disease muscle tissues to different cell types?
#76 opened Jan 15, 2024 by guodudou2
2
imput of Bulk RNA-seq have negative after romoving batch effect
#75 opened Jan 10, 2024 by Lily159753
1
Using Bayes Prism in Python
#74 opened Jan 4, 2024 by jw235
Issue with BayesPrism Gateway
#72 opened Dec 16, 2023 by soph1azhao
1
Do we need to merge our expression file (RNA-seq) and our reference file (scRNA-seq) as our input file?
#70 opened Dec 14, 2023 by misha832
1
question
#69 opened Dec 6, 2023 by iwanttoeatyo
1
Z expression matrix
#68 opened Nov 29, 2023 by martina811
7
Deconvolved estimates matching known cell type proportions
#67 opened Nov 28, 2023 by njrobins
2
cell state label is mandatory ?
#66 opened Nov 13, 2023 by martina811
2
Principle of separation of types?
#65 opened Nov 8, 2023 by Lao-Tz
8
Error in validObject(.Object) : invalid class “prism” object: invalid key
#64 opened Nov 8, 2023 by faenee
sc.dat is single cell or bulk seq matrix?
#62 opened Oct 26, 2023 by trusha0911
3
Is the function: get.exp.stat() using p.value or FDR as default
#61 opened Oct 25, 2023 by Aeget1000
Error: if (any(which.row)) { : missing value where TRUE/FALSE needed
#60 opened Oct 18, 2023 by pcr08
4
Deconvolution with tissues as cell states and annotated cell labels as cell types
#59 opened Sep 22, 2023 by FedericoVann
2
use sparse matrices instead of full matrices ?
#58 opened Aug 29, 2023 by rmontagn
4
Reference with Integrated Matrices Containing Negative Values
#56 opened Aug 8, 2023 by FedericoVann
2
Differential Expression and GSEA
#51 opened Jul 19, 2023 by emilylasse
3
Installation problem with error message ‘Matrix (>= 1.5.0)’ is not available
#48 opened Jul 14, 2023 by alexdray86
1
ProTip! Adding no:label will show everything without a label.