/
setup.cfg
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/
setup.cfg
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# Multistrand nucleic acid kinetic simulator
# Copyright (c) 2008-2024 California Institute of Technology. All rights reserved.
# The Multistrand Team (help@multistrand.org)
# package ======================================================================
[metadata]
name = multistrand
version = 2.2
author = The Multistrand Team
author_email = help@multistrand.org
maintainer = Jake Kaslewicz, Boyan Beronov
maintainer_email = kasle001@umn.edu, beronov@cs.ubc.ca
description = Multistrand nucleic acid kinetic simulator
long_description = file: README.md
long_description_content_type = text/markdown
keywords = RNA DNA chemical kinetics CTMC MJP Gillespie kinetic Monte Carlo simulator
url = http://www.multistrand.org
project_urls =
Documentation = http://www.multistrand.org
Source Code = https://github.com/DNA-and-Natural-Algorithms-Group/multistrand
Issue Tracker = https://github.com/DNA-and-Natural-Algorithms-Group/multistrand/issues
platforms = all
classifiers =
Development Status :: 3 - Alpha
Environment :: Console
Intended Audience :: Science/Research
Natural Language :: English
Operating System :: OS Independent
Programming Language :: C++
Programming Language :: Python :: 3 :: Only
Programming Language :: Python :: 3.9
Programming Language :: Python :: 3.10
Programming Language :: Python :: 3.11
Topic :: Scientific/Engineering :: Bio-Informatics
Topic :: Scientific/Engineering :: Chemistry
Topic :: Scientific/Engineering :: Physics
[options]
install_requires =
nupack >= 4.0.1
numpy >= 1.24
scipy >= 1.10
multiprocess >= 0.70.15
python_requires = >=3.9
packages = multistrand, multistrand._options, multistrand._objects, multistrand.utils
package_dir =
multistrand = src/interface
include_package_data = true
zip_safe = false
[options.extras_require]
mfpt =
scikit-umfpack >=0.3
docs =
sphinx >= 7.0
tutorials =
matplotlib
testing =
pytest >= 8.0
pytest-xdist >= 3.5