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  1. reg-gen reg-gen Public

    Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

    Python 100 30

  2. CrossTalkeR CrossTalkeR Public

    R package to do the Ligand Receptor Analysis Visualization

    Jupyter Notebook 41 10

  3. scopen scopen Public

    scOpen: single-cell open chromatin analysis via NMF modelling

    Python 23 4

  4. MOJITOO MOJITOO Public

    MOJITOO: a fast and universal method for integration of multimodal single cell data

    R 9

  5. sc2marker sc2marker Public

    Surface Marker Detection Using Single Cell Data

    HTML 8 2

  6. CimpleG CimpleG Public

    CimpleG, an R package to find (small) CpG signatures.

    R 4

Repositories

Showing 10 of 37 repositories
  • PILOT Public

    Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)

    Jupyter Notebook 8 MIT 1 2 0 Updated May 2, 2024
  • LR2TF Public
    R 0 0 0 0 Updated Apr 16, 2024
  • sigurd Public

    Using single cell genotype data, the cells are annotated and analysed.

    R 1 0 0 0 Updated Apr 1, 2024
  • CrossTalkeR Public

    R package to do the Ligand Receptor Analysis Visualization

    Jupyter Notebook 41 MIT 10 4 0 Updated Mar 21, 2024
  • phlower Public

    Use hodge decomposition for trajectory analysis

    Python 2 AGPL-3.0 0 0 0 Updated Mar 12, 2024
  • kidney_injury_lineage Public

    Lineage tracing reveals transient phenotypic adaptation of tubular cells during acute kidney injury

    R 0 0 0 0 Updated Feb 10, 2024
  • scrna_seurat_pipeline Public

    comprehensive analysis of single-cell transcriptomics data

    R 18 9 4 0 Updated Feb 7, 2024
  • reg-gen Public

    Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

    Python 100 30 50 0 Updated Jan 5, 2024
  • CimpleG Public

    CimpleG, an R package to find (small) CpG signatures.

    R 4 GPL-3.0 0 2 0 Updated Dec 13, 2023
  • scMEGA Public

    scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference

    R 32 3 8 0 Updated Oct 12, 2023

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