It is the main repository for the project "Epithelial laws" by Gomez-Galvez et al. The input of this project is the output of the LimeSeg plugin of FIJI (http://imagej.net/LimeSeg/).
The steps of this project are explained on: https://github.com/ComplexOrganizationOfLivingMatter/LimeSeg_Pipeline/blob/master/LimeSegTutorial.md#step-3-matlabs-refining-process.
Here, we explained how to run this repository and all the data necessary to do so.
IMPORTANT This project depends on code from https://github.com/ComplexOrganizationOfLivingMatter/Epithelia3D