metadata-extractor

Build the Docker Image

docker build -t hsextract .
abs_path=/Users/scootna/projects/metadata-extractor/tests/test_files

Run the Docker container with necessary permissions

docker run -it -p 9000:9000 --cap-add SYS_ADMIN --device /dev/fuse --entrypoint /bin/bash hsextract

Docker shell commands

s3fs demo-composite /s3 -o passwd_file=/etc/s3cred,use_path_request_style,url=https://minio-api.cuahsi.io
python3 /app/hsextract/main.py extract /s3

Run directory extraction

docker run -v $abs_path:/files hsextract extract /files

cat $abs_path/.hs/output.json

Run extraction on a single file

docker run -v $abs_path:/files hsextract extract /files/watersheds/watersheds.shp

cat $abs_path/.hs/output.json

Run feature (.shp) extraction

docker run -v $abs_path:/files hsextract feature /files/watersheds/watersheds.shp

Run raster (.vrt) extraction

docker run -v $abs_path:/files hsextract raster /files/rasters/logan.vrt

Run netcdf (.nc) extraction

docker run -v $abs_path:/files hsextract netcdf /files/netcdf/netcdf_valid.nc

Run timeseries (.sqlite) extraction

docker run -v $abs_path:/files hsextract timeseries /files/timeseries/ODM2_Multi_Site_One_Variable.sqlite

Run timeseries (.csv) extraction

docker run -v $abs_path:/files hsextract timeseriescsv /files/timeseries/ODM2_Multi_Site_One_Variable_Test.csv

Run referenced timeseries (.refts.json) extraction

docker run -v $abs_path:/files hsextract reftimeseries /files/reftimeseries/multi_sites_formatted_version1.0.refts.json