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Nagarajan Lab

Git repository for Niranjan Nagarajan's Group

Popular repositories

  1. lofreq lofreq Public

    LoFreq Star: Sensitive variant calling from sequencing data

    C 97 30

  2. OPERA-MS OPERA-MS Public

    OPERA-MS - Hybrid Metagenomic Assembler

    C++ 86 17

  3. CaDRReS CaDRReS Public

    Cancer Drug Response prediction using a Recommender System

    Python 41 17

  4. GERMS_16S_pipeline GERMS_16S_pipeline Public

    Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences

    Python 14 7

  5. INC-Seq INC-Seq Public

    INC-Seq: Accurate single molecule reads using nanopore sequencing

    Python 13 4

  6. CaDRReS-Sc CaDRReS-Sc Public

    CaDRReS-Sc is a framework for analyzing drug response heterogeneity based on single-cell RNA-seq data

    Jupyter Notebook 11 3

Repositories

Showing 10 of 41 repositories
  • food_centre_microbiome Public

    City-wide metagenomic surveillance of food centres reveals location-specific microbial signatures and enrichment of antibiotic resistance genes

    Python 0 MIT 0 0 0 Updated Mar 5, 2024
  • OPERA-MS Public

    OPERA-MS - Hybrid Metagenomic Assembler

    C++ 86 17 34 0 Updated Dec 12, 2023
  • AD-caregiver-manuscript Public

    Files and scripts to generate figures for the manuscript titled "Shared signatures and divergence in skin microbiomes of children with atopic dermatitis and their adult caregivers"

    Assembly 0 0 0 0 Updated Sep 12, 2023
  • Candida_auris_CladeVI Public

    WGS analysis for Candida auris

    Jupyter Notebook 1 1 0 0 Updated Jul 31, 2023
  • CaDRReS Public

    Cancer Drug Response prediction using a Recommender System

    Python 41 GPL-3.0 17 3 2 Updated Jul 6, 2023
  • SPMP Public

    Singapore Platinum Metagenomes Project

    Jupyter Notebook 3 MIT 3 0 0 Updated Mar 13, 2023
  • MetageNN Public

    MetageNN is a proof of concept neural network used to obtain a memory-efficient taxonomic classifier robust to sequencing errors and missing genomes

    Python 4 0 0 0 Updated Sep 26, 2022
  • TUGDA Public

    TUGDA is a novel multi-task unsupervised domain adaptation method that leverages transfer learning from tasks/domains in a unified framework.

    Jupyter Notebook 6 3 0 0 Updated Sep 26, 2022
  • lofreq Public

    LoFreq Star: Sensitive variant calling from sequencing data

    C 97 30 72 2 Updated Jul 22, 2022

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