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41 Open 58 Closed
41 Open 58 Closed
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Issues list

Aggregate Data Row/Column index specification easy Simple fixes for beginners to implement
#154 opened Mar 12, 2024 by WilliamKMLai
Incorrect 3 prime R1 encoding for SE data bug
#153 opened Jan 31, 2024 by owlang
@owlang
update DNAShape tool with new shapes DB
#152 opened Dec 6, 2023 by owlang
Add @PG tag to BAM header in Filter PIP-seq tool
#144 opened Sep 4, 2023 by owlang
Write an Anaconda recipe for bioconda
#141 opened Aug 24, 2023 by owlang
Calculate scaling factor by regions (NFR normalization) New Tool
#139 opened Aug 9, 2023 by owlang
12 tasks
Reduce repetitive code in ScriptManagerGUI
#138 opened Aug 4, 2023 by owlang
Filter BED/GFF by limits on chrom ends New Tool
#135 opened Jul 21, 2023 by owlang
Add FASTA Chr Name Converter New Tool
#131 opened Jun 21, 2023 by owlang
@Erikpav
1
Add more picard options to MarkDuplicatesWrapper
#128 opened Jun 9, 2023 by owlang
Add support for separate composite output files in TagPileup streamline
#125 opened Jun 8, 2023 by owlang
Write Galaxy wrappers for ChIP-exo Tutorial
#124 opened Jun 7, 2023 by owlang
3 of 6 tasks
@cleson28
Wrap priority Picard tools into GUI
#122 opened Jun 6, 2023 by owlang
4 of 8 tasks
@Erikpav
Gradle Shadow minimize() bug
#116 opened Apr 7, 2023 by owlang
JUnit tests for CI development of all tools
#114 opened Apr 6, 2023 by owlang
6 tasks
TagPileup Blacklist function not working bug
#106 opened Dec 8, 2022 by owlang
1
Normalize cdt (per row) by histone occupancy feature-request
#105 opened Nov 18, 2022 by jcha40
1
Add new tools based on Perl script collection New Tool
#92 opened Aug 20, 2022 by owlang
Parameter tool-tips on TagPileup easy Simple fixes for beginners to implement enhancement
#84 opened Apr 6, 2022 by WilliamKMLai
Scale Matrix GUI results in zero matrices bug
#81 opened Mar 14, 2022 by owlang
1
Buttons get cut off by window border when built on Linux
#78 opened Jan 7, 2022 by jcha40
CDT to Composite Tool New Tool
#74 opened Dec 21, 2021 by owlang v0.15
Update binning strategy for TagPileup
#72 opened Dec 21, 2021 by owlang
Create CoordinateUtilities class to standardize loading coordinate files streamline
#65 opened Apr 23, 2021 by owlang
New Tool to Convert BigWig/Wig/BedGraph to CDT enhancement
#55 opened Mar 19, 2021 by owlang
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