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@Bitbol-Lab

Bitbol-Lab

Popular repositories

  1. ProtMamba-ssm ProtMamba-ssm Public

    ProtMamba: a homology-aware but alignment-free protein state space model

    Jupyter Notebook 21 2

  2. Iterative_masking Iterative_masking Public

    Iterative masking algorithm on MSA Transformer to generate synthetic sequences

    Jupyter Notebook 19 7

  3. Phylogeny-MSA-Transformer Phylogeny-MSA-Transformer Public

    Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www.nature.com/articles/s41467-022-34032-y)

    Jupyter Notebook 14 2

  4. DiffPALM DiffPALM Public

    Differentiable Pairing using Alignment-based Language Models

    Jupyter Notebook 13 2

  5. Phylogeny-Partners Phylogeny-Partners Public

    Jupyter Notebook 1

  6. DiffPaSS DiffPaSS Public

    Differentiable Pairing using Soft Scores

    Jupyter Notebook 1 1

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