Bitbol-Lab
Popular repositories
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ProtMamba-ssm
ProtMamba-ssm PublicProtMamba: a homology-aware but alignment-free protein state space model
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Iterative_masking
Iterative_masking PublicIterative masking algorithm on MSA Transformer to generate synthetic sequences
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Phylogeny-MSA-Transformer
Phylogeny-MSA-Transformer PublicSupporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www.nature.com/articles/s41467-022-34032-y)
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Repositories
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- ProtMamba-frozen-nips Public
- Phylogeny-sector-inference Public
- Structured_pop Public
This repository provides the python code used to generate Figures in articles "Frequent asymmetric migrations suppress natural selection in spatially structured populations" , and "Mutant fate in spatially structured populations on graphs: connecting models to experiments" by A. Abbara, L. Pagani, C. García-Pareja, and A.-F. Bitbol.
- Iterative_masking Public
Iterative masking algorithm on MSA Transformer to generate synthetic sequences
- Cooperation_structured_pop Public
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- T4P-T6SS-interplay Public
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