Seminars

1. 08-01-2024: BioGenies in 2024, Michał Burdukiewicz.
2. 18-12-2023: THE SEMINAR, Oriol Bárcenas.
3. 20-11-2023: Robust dataset generation and feature characterization for the specific prediction and benchmarking of client and driver proteins in LLPS, Carlos Pintado-Grima.
4. 13-11-2023: Deep neural networks (Understanding Deep Learning, Chapter 8), Jakub Kała.
5. 04-11-2023: no seminar.
6. 30-10-2023: BioGenies update #10, Michal Burdukiewicz.
7. 23-10-2023: Cracking the black box of deep sequence-based protein-protein interaction prediction, Judith Bernett.
8. 16-10-2023: Cracking the black box of deep sequence-based protein-protein interaction prediction (pre-print comments): Jarosław Chilimoniuk.
9. 09-10-2023: Analysis of amyloid-amyloid interaction networks, Laura Bąkała.
10. 02-10-2023: Tree of science, Michał Burdukiewicz.
11. 25-09-2023: Deep neural networks (Understanding Deep Learning, Chapter 7), Jakub Kała.
12. 18-09-2023: Symptome Checkers, Michał Burdukiewicz.
13. 11-09-2023: Deep neural networks (Understanding Deep Learning, Chapter 6), Jakub Kała.
14. 21-08-2023: Copernican Revolution, Michał Burdukiewicz.
15. 18-08-2023: BioGenies: Year 3.
16. 14-08-2023: no seminar, we move it to 18-08-2023.
17. 07-08-2023: Deep neural networks (Understanding Deep Learning, Chapter 6), Jakub Kała.
18. 31-07-2023: Deep neural networks (Understanding Deep Learning, Chapter 5): notebooks, Jakub Kała.
19. 17-07-2023: BioGenies update #9, Michal Burdukiewicz.
20. 10-07-2023: Deep neural networks (Understanding Deep Learning, Chapter 4): notebooks, Michal Burdukiewicz.
21. 03-07-2023: Styles with Benefits. The StyloMetrix Vectors for Stylistic and Semantic Text Classification of Small-Scale Datasets and Different Sample Length, Inez Okulska.
22. 26-06-2023: Shallow neural networks (Understanding Deep Learning, Chapter 3): notebooks, Jakub Kała.
23. 19-06-2023: Shallow neural networks (Understanding Deep Learning, Chapter 3): notebooks, Jakub Kała. (Michał was not available)
24. 12-06-2023: Shallow neural networks (Understanding Deep Learning, Chapter 3), Jakub Kała.
25. 05-06-2023: Supervised learning (Understanding Deep Learning, Chapter 2), Michał Burdukiewicz.
26. 19-05-2023: When quality does not matter: a curious case of the subplastid location prediction, Michał Burdukiewicz
27. 12-05-2023: Grantopisanie, Michał Burdukiewicz.
28. (maybe) 17-04-2023: Introduction to metabolomics, Michał Ciborowski (in Polish).
29. 03-04-2023: Preludium to science, Jarosław Chilimoniuk & Krystyna Grzesiak.
30. 27-03-2023: Prediction of adhesins, Katarzyna Sidorczuk.
31. 20-03-2023: Imputomics, Jarosław Chilimoniuk.
32. 13-03-2023: Introduction to metabolomics, Michał Ciborowski (in Polish).
33. 06-03-2023:
34. 27-02-2023:
35. 20-02-2023: Mining the entire space of peptide sequences, Michał Burdukiewicz and Jakub Kała.
36. 13-02-2023: A heuristic algorithm solving the mutual-exclusivity sorting problem, Alessandro Vinceti.
37. 06-02-2023: Optimal ensemble selection, part 2, Michał Burdukiewicz.
38. 30-01-2023: no seminar, only update.
39. 23-01-2023: Optimal ensemble selection, Michał Burdukiewicz.
40. 16-01-2023: Handcrafted versus non-handcrafted (self-supervised) features for the classification of antimicrobial peptides: complementary or redundant?, Carlos Alberto Brizuela Rodríguez.
41. 10-01-2023: BioGenies in 2023.
42. 12-12-2022: Handcrafted versus non-handcrafted (self-supervised) features for the classification of antimicrobial peptides: complementary or redundant?, Carlos Alberto Brizuela Rodríguez. only update.
43. 05-12-2022: AMPLE: detection of antimicrobial peptides in metagenomic data Michał Burdukiewicz.
44. 28-11-2022: Lessons from Poland Michał Burdukiewicz.
45. 21-11-2022: no seminar, Michał is still networking in Warsaw.
46. 14-11-2022: no seminar, Michał is networking in Warsaw.
47. 07-11-2022: no seminar, Michał is networking in Białystok.
48. 31-10-2022: Your scariest research BioGenies.
49. 26-10-2022: no seminar, Michał is networking in Wrocław.
50. 17-10-2022: Pitfalls of machine learning for peptide analysis, Michał Burdukiewicz.
51. 10-10-2022: The dynamic landscape of peptide function prediction: Oriol Bárcenas, Michał Burdukiewicz, Carlos Pintado-Grima.
52. 03-10-2022: BioGenies update #8, Michał Burdukiewicz.
53. 26-09-2022: DRAMP 3.0: an enhanced comprehensive data repository of antimicrobial peptides, Heng Zheng (MS Teams).
54. 19-09-2022: no seminar, Michał has fun at the ECCB2022.
55. 12-09-2022: no seminar, Michał has fun at the Barcelona Aggregation Training School.
56. 05-09-2022: Optimal prediction of antimicrobial peptides, part 2, Michał Burdukiewicz.
57. 29-08-2022: Optimal prediction of antimicrobial peptides, Michał Burdukiewicz.
58. 22-08-2022: PlastoGram v2, Katarzyna Sidorczuk.
59. 15-08-2022: Public holidays.
60. 08-08-2022: PlastoGram v1, Katarzyna Sidorczuk.
61. 02-08-2022: BioGenies update #7, Michał Burdukiewicz.
62. 25-07-2022: Empirical Bayes functional models for hydrogen deuterium exchange mass spectrometry, Oliver M Crook.
63. 18-07-2022: Transfer learning in proteins: evaluating novel protein learned representations for bioinformatics tasks, Emilio Fenoy.
64. 11-07-2022: Do deep learning models make a difference in the identification of antimicrobial peptides?, Carlos Alberto Brizuela Rodríguez.
65. 04-07-2022: Inside the web of science, Michał Burdukiewicz.
66. 27-06-2022: golem, Dominik Rafacz & Gustav Meyrink.
67. 20-06-2022: bookdown, Krystyna Grzesiak.
68. 13-06-2022: no seminar, only update.
69. 06-06-2022: no seminar, only update.
70. 30-05-2022: Zastosowania zautomatyzowanej kuracji jakości danych w modelowaniu systemów immunoinformatycznych opartym na uczeniu maszynowym, Dominik Rafacz.
71. 23-05-2022: no seminar, only update.
72. 16-05-2022: Modularizing Shiny, Dominik Rafacz.
73. 09-05-2022: Analiza wpływu czynników środowiskowych oraz zanieczyszczeńpowietrza na choroby układu otolaryngologicznego na podstawie kohorty wrocławskiej z 2015 roku, Dominik Nowakowski
74. 25-04-2022: Shiny intro, Michał Burdukiewicz.
75. 11-04-2022: Effective presentations, Mariusz Trojanowski.
76. 04-04-2022: no seminar, only update.
77. 28-03-2022: Peer-review principles, Michał Burdukiewicz.
78. 21-03-2022: no seminar, only update.
79. 14-03-2022: no seminar, only update.
80. 07-03-2022: Michał talks about things, Michał Burdukiewicz.
81. 02-03-2022: no seminar, only update.
82. 16-02-2022: no seminar, only update.
83. 09-02-2022: no seminar, only update.
84. 02-02-2022: AmyloGraph: Michał nie umie w zarządzanie, Michał Burdukiewicz.
85. 26-01-2022: protti: an R package for comprehensive data analysis of peptide- and protein-centric bottom-up proteomics data, Jan-Philipp Quast.
86. 19-01-2022: New Year's Resolutions, Michał Burdukiewicz.
87. 22-12-2021: Memomikołajki, BioGenies.
88. 15-12-2021: BioGenies update #6, Michał Burdukiewicz.
89. 08-12-2021: Molecular Insights into the Differential Dynamics of SARS-CoV-2 Variants of Concern (VOC), Nabanita Mandal.
90. 01-12-2021: Applications of automated data quality curation in machine learning based modelling of immunoinformatic systems: Episode One, Dominik Rafacz.
91. 24-11-2021: adhesiomeR, Katarzyna Sidorczuk.
92. 17-11-2021: Peptipedia, David Medina-Ortiz (new time: 3 PM UTC+2).
93. 10-11-2021: Building HMM and molecular docking analysis for the sensitive detection of anti-viral pneumonia antimicrobial peptides (AMPs), Olalekan Bakare.
94. 03-11-2021: Blood-brain barrier peptides, Michał Burdukiewicz.
95. 27-10-2021: LILOP 2.0: I am choosing my hair color, Michał Burdukiewicz.
96. 20-10-2021: Poster session at IBB, BioGenies.
97. 13-10-2021: My own github profile readme, Michał Burdukiewicz.
98. 06-10-2021: Protein-peptide docking in the era of accurate structure-prediction, Sebastian Kmiecik.
99. 29-09-2021: Why my research is bad?, Michał Burdukiewicz.
100. 22-09-2021: no seminar, only update.
101. 15-09-2021: AmyloGraph: a comprehensive database of amyloid-amyloid interactions, Michał Burdukiewicz.
102. 08-09-2021: Novel project managment, Krystyna Grzesiak, Weronika Puchała.
103. 01-09-2021: Wstęp do modeli liniowych, Krystyna Grzesiak.
104. 25-08-2021: Next grants, Michał Burdukiewicz.
105. 18-08-2021: Elevator pitch, BioGenies.
106. 11-08-2021: Wstęp do wstępu do modeli liniowych, Krystyna Grzesiak.
107. 04-08-2021: Is the human genome 3D structure an inherited trait?, Michał Łaźniewski.
108. 28-07-2021: PlastoGram, Katarzyna Sidorczuk.
109. 21-07-2021: How to eat ice cream?, Dominik Rafacz.
110. 14-07-2021: BioGenies update #5: Year One, Michał Burdukiewicz.
111. 12-07-2021: Computational modeling of protein-protein complexes with therapeutic binding proteins, Filip Radom.
112. 07-07-2021: OpenPGX: a personalized approach to pharmacogenomics recommendations, Monika Krzyżanowska.
113. 30-06-2021: Filtering k-mer matrices - master thesis, Jakub Kała.
114. 23-06-2021: Genomics Platform@WUT conference.
115. 16-06-2021: Comparing deuteration curves, Krystyna Grzesiak.
116. 09-06-2021: no seminar, only update.
117. 02-06-2021: Bioinformatic and experimental analyses of bacterial functional amyloids CsgA and CsgB, Jarosław Chilimoniuk.
118. 26-05-2021: A3D 2.0 update for the prediction and optimization of protein solubility, Jordi Pujols, Valentín Iglesias.
119. 19-05-2021: Comparing deuteration curves, Krystyna Grzesiak.
120. 12-05-2021: LILO: a database of biological learners, Michał Burdukiewicz.
121. 05-05-2021: Ocena jakości nadzorowanych metod uczenia klasyfikacji, Katarzyna Stapor.
122. 28-04-2021: Comparing deuteration curves, Krystyna Grzesiak.
123. 21-04-2021: ampir: an R package for fast genome-wide prediction of antimicrobial peptides, Legana C H W Fingerhut, Ira Cooke.
124. 14-04-2021: no seminar, only update.
125. 07-04-2021: Uncertainties in HDX-MS measurements, Weronika Puchała.
126. 31-03-2021: BioGenies update #4, Michał Burdukiewicz.
127. 24-03-2021: Improved metagenome binning and assembly using deep variational autoencoders, Simon Rasmussen.
128. 17-03-2021: Filtering k-mer matrices - follow up, Jakub Kała.
129. 10-03-2021: Filtering k-mer matrices, Jakub Kała.
130. 03-03-2021: MegaGO: a fast yet powerful approach to assess functional gene ontology similarity across meta-omics data sets, Henning Schiebenhöfer.
131. 24-02-2021: Deploying apps in shinyproxy on BioGenies web server, Filip Pietluch.
132. 17-02-2021: Comparing deuteration curves, Krystyna Grzesiak.
133. 10-02-2021: k-mer space as an efficient representation of biological sequences, Jadwiga Słowik.
134. 03-02-2021: Generation of negative datasets, Michał Burdukiewicz.
135. 27-01-2021: Low complexity proteins, Aleksandra Gruca.
136. 20-01-2021: Biology for data scientists, Dominik Cysewski.
137. 13-01-2021: Bayesian optimization in prediction of amyloid proteins, Paulina Grudzińska. Writing loops in R, Mateusz Bąkała.
138. 16-12-2020: Podsumowanie roku, BioGenies.
139. 09-12-2020: Frontiers of precision medicine, Stefan Rödiger.
140. 02-12-2020: BioGenies update #3, Michał Burdukiewicz.
141. 25-11-2020: High-resolution HDX - follow up, Weronika Puchała.
142. 18-11-2020: High-resolution HDX, Weronika Puchała.
143. 04-11-2020: BioGenies update #2, Michał Burdukiewicz. Writing loops in R, Mateusz Bąkała.
144. 28-10-2020: tidysq - follow up, Dominik Rafacz.
145. 21-10-2020: tidysq, Dominik Rafacz.
146. 14-10-2020: Frontiers of precision medicine, Stefan Rödiger.
147. 07-10-2020: Simulating sequences for feature filtering - follow up, Jakub Kała.
148. 30-09-2020: Simulating sequences for feature filtering, Jakub Kała.
149. 23-09-2020: Why R? presentations - general test.
150. 16-09-2020: BioGenies update #1, Michał Burdukiewicz.
151. 09-09-2020: Evolution of AMPs, Przemysław Gagat.
152. 02-09-2020: How to organise a project, Leon Eyrich Jessen.
153. 26-08-2020: Using UniProt, Filip Pietluch.
154. 19-08-2020: Proteomics 101, part 2, Dominik Cysewski.
155. 12-08-2020: Proteomics 101, part 1, Dominik Cysewski.
156. 5-08-2020: tidysq forum: o kopiach obiektów w R, Mateusz Bąkała.
157. 29-07-2020: VisQual, Jan Sawicki.
158. 22-07-2020: HaDeX, Weronika Puchała.
159. 15-07-2020: AmpGram, Katarzyna Sidorczuk.
160. 8-07-2020: QuiPT and feature filtering, Jakub Kała.
161. 1-07-2020: Effective k-mer counting, Jadwiga Słowik.