Welcome to the AMPSphere website!
- Live website: http://ampsphere.big-data-biology.org/home.
- Backend API: http://ampsphere-api.big-data-biology.org/
- For the backend
- Sqlite database -- data management
- FastAPI -- backend API implementation
- Sqlalchemy -- database mapping and data querying
- Pydantic -- API data validation
- MMseqs -- AMP search API
- HMMER -- family search API
- Gunicorn + Uvicorn -- running the backend
- Nginx -- running as an intermediate server
- For the frontend
- Vue.js ecosystems
- VueRouter -- router across website pages
- VueAxios -- data access from the backend
- Quasar + Element Plus -- building the website layout
- Plotly.js -- generating visualizations of data distribution
- LogoJS -- generating Sequence logos for AMP families
- helicalwheel -- generating helical wheel graphs for AMPs
- Vue.js ecosystems
The website is currently a work-in-progress, not yet ready for production. Any comments/feedback will be greatly appreciated.
We receive feedback via GitHub issues and Email, but please first consider using the GitHub issues, as the problem you're facing may be also useful to other users.
| Name | Organization | |
|---|---|---|
| Hui Chong | hui@big-data-biology.org | Research Assistant, Institute of Science and Technology for Brain-inspired Intelligence, Fudan University |
| Célio Dias Santos Júnior | celio@big-data-biology.org | Postdoc Researcher, Institute of Science and Technology for Brain-inspired Intelligence, Fudan University |
| Luis Pedro Coelho | luispedro@big-data-biology.org | Principle Investigator, Institute of Science and Technology for Brain-inspired Intelligence, Fudan University |