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Bergam0t/README.md

Hi there - I'm Sammi! 🚵 🏸 🎷 👩‍💻

I'm currently a trainer on the Health Service Modelling Associates Programme.

I was previously a data analyst, and later data scientist, in a mental health trust in the NHS.

I completed my BA in Biological Sciences at the University of Oxford in 2011-14, and my MSc in Health Data Science at the University of Exeter in 2020-21, with a focus on web app development for healthcare service improvement.

I'm currently working on

  • animated outputs for discrete event simulation event logs
  • user-friendly visualisation of large graph networks in Streamlit (including adding extra features to the excellent st-cytoscape extension)
  • open-source teaching materials on geographical visualisation, location allocation problems, gradient boosting methods, explainable AI, web app development with Streamlit, reproducible outputs with Quarto, forecasting, process mining with pm4py, and more...

My current favourite things to work with are

I'd love to chat about

  • how to use routinely collected data better to improve mental healthcare services
  • how to make it easier for analysts and data scientists to securely deploy custom web apps in their organisations
  • improving data literacy in the NHS and helping stakeholders understand the amazing potential of R, Python, advanced analytics, operational research and data science
  • how to teach coding, data science and operational research effectively

Here are a couple of the things I've created:

Animated event logs for discrete event simulation

This video intermittently fails to load - try refreshing the page if it's showing an error!

2023-11-23.10-14-16.mp4

Play around with a live demo of this here - note that it won't load in Firefox!

Health and Social Care Service Use Timelines (Theographs/Pearn Charts) for PowerBI

This custom PowerBI visual takes a simple, routinely collected dataset of patient history and displays it in a clear format.

Long-term referrals as well as individual interactions with services can be shown, with customisable tooltips, allowing clinicians to get an overview of a patient's history in a quick glance and spot repeated patterns of service interaction. Designed initially for use in mental health services, where clients can have more than a decade of data, thousands of contacts, and systems which display these details as rows of text rather than in a way that allows easy interpretation.

image

SPC charts for PowerBI (based on code from the NHSRPlotTheDots project)

This custom PowerBI visual allows SPC charts to be created within PowerBI that automatically adhere to the making data count guidance.

image

Extensive customisation is available through built-in menus. Multiple output types are possible, including faceted graphs, metric cards, and several summary tables.

Pinned

  1. hsma-programme/Teaching_DES_Concepts_Streamlit hsma-programme/Teaching_DES_Concepts_Streamlit Public

    A streamlit app (running from github pages using the stlite package) for teaching concepts of discrete event simulation, including animated entity flow plots created in Plotly. IMPORTANT NOTE: Work…

    Python 6 2

  2. nhs_ptd_power_bi nhs_ptd_power_bi Public

    Forked from nhs-r-community/NHSRplotthedots

    PowerBI/Plotly implementation of the NHS-R Making Data Count package

    HTML 5

  3. community_service_timelines community_service_timelines Public

    PowerBI version of the Theograph (aka Pearn Chart or service use timeline) for visualising patient interactions with healthcare services

    HTML

  4. attendance_analyser attendance_analyser Public

    A streamlit app (running from github pages using the stlite package) for viewing summary statistics and graphs for Zoom logs. NOTE: Works on Chrome, Edge or Safari - not Firefox.

    HTML

  5. simpy_visualisation simpy_visualisation Public

    Code for visualising discrete event simulations in python, along with several healthcare-focussed example DES models in simpy

    Python

  6. hsma-programme/hsma6_des_book hsma-programme/hsma6_des_book Public

    **Work In Progress** A book summarising the content of the DES module in the HSMA programme and covering additional concepts that wouldn't fit in the course

    TeX