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@BDI-pathogens

Pandemic Sciences Institute: Pathogen Dynamics Group

Popular repositories

  1. OpenABM-Covid19 OpenABM-Covid19 Public

    OpenABM-Covid19: an agent-based model for modelling the spread of SARS-CoV-2 (coronavirus) and control interventions for the Covid-19 epidemic

    Python 110 76

  2. covid-19_instant_tracing covid-19_instant_tracing Public

    Preprints from the BDI Pathogen Dynamics team regarding digital contact tracing and other non-pharmaceutical interventions for Covid-19. More details on our website:

    100 12

  3. phyloscanner phyloscanner Public

    Phylogenetics between and within hosts at once, all along the genome.

    HTML 43 14

  4. EpiLine EpiLine Public

    Bayesian Modelling in Epidemiology Case Line Lists

    R 11 4

  5. covid-19_shiny covid-19_shiny Public

    Code for "Digital contact tracing for SARS-COV-2" shiny app

    R 10 3

  6. Isle_of_Wight Isle_of_Wight Public

    Data and source code for reproducing the analysis of paper:

    Stata 4 1

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