Added tooltips

Tooltips are now provided for important buttons

FASTA export, consensus sequence and more colour options

The following features have been added

• FASTA export - enabled by fasta option with fastaLabel available to set the label on the button
• Consensus sequence - enabled by consensus option
• Alternative colour schemes - set the default with colourScheme and allow the end user to choose with the selectColour option. The web programmer may provide a subset of these (or extend the available colours in the CSS) and specify this with the colourChoices option

In addition a bug has been fixed to refesh the buttons when a page is reloaded

New dotify mode and more attractive alerts and confirms

V1.3 adds the following:

• New 'dotify' mode. Replaces repeating amino acids in the alignment with dots
• Improved alerts and confirm dialogues that use JQuery UI dialog boxes rather than pure JavaScript
• Documented CSS for layout of the main display and the controls

New options are:

• dotify Boolean option to switch on the dotify mode
• nocolour or nocolor Boolean to give the dots in dotify mode a white background
• toggleDotify Boolean to display a checkbox to toggle dotify mode
• toggleNocolour or toggleNocolor Boolean to display a checkbox to toggle the nocolour option in dotify mode

First feature-rich release

Fully working release. The main user entry point is:

    printJSAV(divId, sequenceArray, options);

Where:

• divId is the name of a div that will be created
• sequenceArray is an array of sequence objects - these contain id and sequence fields
• options is an object describing options - see below

The options for controlling the display are:

• sortable - Should the sorting options be displayed (default: false)
• width - The width of the selection slider with units (default: '400px')
• selectable - Should selection checkboxes be displayed for each sequence
• deletable - Makes it possible to delete sequences
• highlight - Array of ranges to highlight (e.g. [24,34,50,56] would highlight positions 24-34 and 50-56)
• submit - URL for submitting selected sequences
• submitLabel - Label for submit button
• action - Function to call using selected sequences - the function will be passed the divId and array of sequence objects
• actionLabel - Label for action button