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Merge pull request #633 from AFM-SPM/SylviaWhittle/speed-up-tests
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Speed up tests
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@SylviaWhittle
SylviaWhittle committed Jul 28, 2023
2 parents 6e0a012 + 2b18de2 commit adccced
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3 changes: 3 additions & 0 deletions pyproject.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -85,6 +85,8 @@ dev = [
"pre-commit",
"pylint",
"pyupgrade",
"pytest-durations",
"pytest-xdist",
]
pypi = [
"build",
Expand Down Expand Up @@ -149,6 +151,7 @@ testpaths = [
]
filterwarnings = [
"ignore::DeprecationWarning",
"ignore::PendingDeprecationWarning",
"ignore::UserWarning"
]

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25 changes: 3 additions & 22 deletions tests/_regtest_outputs/test_grainstats_minicircle.test_grainstats_regression.out
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Original file line number Diff line number Diff line change
@@ -1,24 +1,5 @@
centre_x centre_y radius_min radius_max radius_mean radius_median height_min height_max height_median height_mean volume area area_cartesian_bbox smallest_bounding_width smallest_bounding_length smallest_bounding_area aspect_ratio threshold max_feret min_feret image
molecule_number
0 4.858326e-08 4.364186e-08 3.353362e-09 4.202632e-08 2.189157e-08 1.888433e-08 1.696196e-09 2.824054e-09 2.189427e-09 2.174921e-09 1.524358e-24 7.008797e-16 3.751366e-15 3.279325e-08 8.134033e-08 2.667414e-15 2.480399 above 8.140863e-08 3.279325e-08 None
1 1.834938e-08 9.632027e-08 1.728240e-09 2.004716e-08 1.353067e-08 1.457673e-08 1.696579e-09 3.915340e-09 2.403021e-09 2.388421e-09 1.006029e-24 4.212111e-16 1.006660e-15 2.183270e-08 3.862003e-08 8.431796e-16 1.768908 above 3.862395e-08 2.183270e-08 None
2 4.014064e-07 9.130932e-08 2.247868e-09 2.092879e-08 1.262073e-08 1.308988e-08 1.701522e-09 3.181919e-09 2.413371e-09 2.367453e-09 1.022618e-24 4.319488e-16 9.644417e-16 2.433167e-08 3.703391e-08 9.010969e-16 1.522046 above 3.713246e-08 2.433167e-08 None
3 2.187417e-07 1.714056e-07 6.814455e-09 2.713525e-08 1.648840e-08 1.534626e-08 1.696155e-09 3.122698e-09 2.276266e-09 2.270532e-09 8.998553e-25 3.963192e-16 1.391022e-15 2.173982e-08 5.168989e-08 1.123729e-15 2.377660 above 5.171010e-08 2.173982e-08 None
4 3.538219e-07 2.066968e-07 2.702207e-09 2.457881e-08 1.457483e-08 1.548364e-08 1.696527e-09 3.100608e-09 2.402200e-09 2.365512e-09 9.848345e-25 4.163304e-16 1.425187e-15 1.553757e-08 4.698990e-08 7.301088e-16 3.024276 above 4.699523e-08 1.553757e-08 None
5 2.998251e-07 2.109244e-07 7.785855e-09 2.418232e-08 1.626528e-08 1.703002e-08 1.695861e-09 2.994578e-09 2.340837e-09 2.310254e-09 9.556272e-25 4.136459e-16 1.426651e-15 3.009504e-08 4.107973e-08 1.236296e-15 1.365000 above 4.127216e-08 3.009504e-08 None
6 4.329531e-07 2.149273e-07 1.532000e-09 2.267545e-08 1.378523e-08 1.420012e-08 1.695632e-09 3.228733e-09 2.464346e-09 2.404208e-09 1.014439e-24 4.219432e-16 1.093782e-15 1.794681e-08 4.340026e-08 7.788962e-16 2.418271 above 4.363195e-08 1.794681e-08 None
7 1.949788e-07 2.305537e-07 7.892726e-09 2.312317e-08 1.676135e-08 1.692026e-08 1.695923e-09 2.914617e-09 2.338171e-09 2.301259e-09 1.041762e-24 4.526921e-16 1.401271e-15 2.724168e-08 4.323054e-08 1.177673e-15 1.586926 above 4.350873e-08 2.724168e-08 None
8 3.900441e-07 2.738075e-07 9.908367e-10 2.435203e-08 1.539925e-08 1.666854e-08 1.699214e-09 3.040715e-09 2.382412e-09 2.343647e-09 1.192497e-24 5.088211e-16 1.553064e-15 2.012970e-08 4.701641e-08 9.464261e-16 2.335674 above 4.731352e-08 2.012970e-08 None
9 4.297399e-07 2.956288e-07 1.052837e-09 2.125697e-08 1.408845e-08 1.560378e-08 1.696372e-09 4.403619e-09 2.442649e-09 2.453187e-09 1.137479e-24 4.636739e-16 1.237277e-15 2.515599e-08 3.982226e-08 1.001768e-15 1.583013 above 4.087109e-08 2.470045e-08 None
10 1.219523e-07 3.089895e-07 7.551337e-09 2.541477e-08 1.631092e-08 1.612025e-08 1.696061e-09 3.048668e-09 2.443006e-09 2.367450e-09 1.186698e-24 5.012559e-16 1.546230e-15 2.311381e-08 4.974462e-08 1.149787e-15 2.152160 above 4.974735e-08 2.311381e-08 None
11 3.975231e-08 3.813096e-07 8.455608e-10 2.615137e-08 1.559010e-08 1.597122e-08 1.698707e-09 2.954468e-09 2.346255e-09 2.305250e-09 1.126829e-24 4.888099e-16 1.091342e-15 1.784021e-08 5.171784e-08 9.226575e-16 2.898947 above 5.174076e-08 1.784021e-08 None
12 3.909942e-07 3.759527e-07 3.992841e-09 2.584674e-08 1.422920e-08 1.419212e-08 1.696123e-09 3.037262e-09 2.401636e-09 2.336882e-09 1.094387e-24 4.683106e-16 1.316346e-15 2.676787e-08 4.501674e-08 1.205002e-15 1.681746 above 4.613046e-08 2.676787e-08 None
13 2.609042e-07 3.746163e-07 4.215101e-09 2.399790e-08 1.623232e-08 1.706819e-08 1.695869e-09 2.928760e-09 2.338538e-09 2.304924e-09 1.061421e-24 4.605014e-16 1.265830e-15 2.320693e-08 4.736385e-08 1.099170e-15 2.040936 above 4.752709e-08 2.320693e-08 None
14 3.048191e-07 3.905625e-07 1.028475e-08 2.567684e-08 1.713842e-08 1.728138e-08 1.695868e-09 3.077227e-09 2.347609e-09 2.302779e-09 9.924348e-25 4.309727e-16 1.503280e-15 3.313474e-08 3.991581e-08 1.322600e-15 1.204651 above 4.711970e-08 3.096230e-08 None
15 4.551261e-07 4.278995e-07 3.309927e-09 2.535971e-08 1.553214e-08 1.544894e-08 1.695841e-09 3.986421e-09 2.394587e-09 2.390516e-09 1.107253e-24 4.631858e-16 1.171387e-15 2.012749e-08 4.929039e-08 9.920918e-16 2.448909 above 4.936323e-08 2.012749e-08 None
16 2.196968e-07 4.182337e-07 2.690567e-09 2.678287e-08 1.577837e-08 1.567660e-08 1.695769e-09 3.190581e-09 2.342929e-09 2.297870e-09 1.101912e-24 4.795364e-16 1.346607e-15 2.343776e-08 4.923284e-08 1.153907e-15 2.100578 above 4.928407e-08 2.343776e-08 None
17 3.755111e-07 4.283359e-07 6.774860e-09 2.322643e-08 1.761084e-08 1.848001e-08 1.697127e-09 3.093256e-09 2.350915e-09 2.311489e-09 1.128187e-24 4.880778e-16 1.317810e-15 2.882105e-08 4.416457e-08 1.272869e-15 1.532372 above 4.580396e-08 2.882105e-08 None
18 4.609333e-07 4.591638e-07 6.711047e-09 2.607763e-08 1.601124e-08 1.562173e-08 1.695665e-09 3.135791e-09 2.393744e-09 2.345457e-09 1.040592e-24 4.436627e-16 1.459353e-15 1.931928e-08 5.012120e-08 9.683054e-16 2.594362 above 5.032530e-08 1.931928e-08 None
19 4.199464e-07 4.557784e-07 8.781252e-09 2.432133e-08 1.714385e-08 1.786888e-08 1.697729e-09 3.059596e-09 2.374219e-09 2.327297e-09 1.117160e-24 4.800245e-16 1.464965e-15 3.386949e-08 3.978843e-08 1.347614e-15 1.174757 above 4.406329e-08 3.139916e-08 None
20 9.070676e-08 4.681013e-07 3.161241e-09 2.384248e-08 1.519117e-08 1.579224e-08 1.696130e-09 3.008969e-09 2.410313e-09 2.361916e-09 1.092277e-24 4.624537e-16 1.445930e-15 1.858279e-08 4.723408e-08 8.777409e-16 2.541818 above 4.726191e-08 1.858279e-08 None
21 1.999197e-08 5.006281e-07 7.537534e-10 2.449769e-08 1.475576e-08 1.512496e-08 1.697374e-09 3.068808e-09 2.433538e-09 2.368504e-09 1.055441e-24 4.456150e-16 1.205552e-15 1.818548e-08 4.815516e-08 8.757250e-16 2.648000 above 4.817985e-08 1.818548e-08 None
0 7.500895e-08 4.775362e-08 4.044948e-09 2.542964e-08 1.600048e-08 1.647888e-08 1.006306e-09 2.696640e-09 1.597337e-09 1.596062e-09 1.084371e-24 6.794043e-16 1.319762e-15 2.053897e-08 5.037861e-08 1.034725e-15 2.452830 above 5.037861e-08 2.053897e-08 None
1 8.028649e-08 7.895237e-08 6.658610e-09 2.623645e-08 1.609777e-08 1.573693e-08 1.009513e-09 2.480685e-09 1.668932e-09 1.683197e-09 1.031843e-24 6.130257e-16 1.526707e-15 2.017441e-08 4.942135e-08 9.970467e-16 2.449704 above 4.987228e-08 2.017441e-08 None
2 4.001424e-08 7.585689e-08 9.745734e-09 2.369314e-08 1.746942e-08 1.818722e-08 1.006681e-09 2.139365e-09 1.646541e-09 1.598842e-09 1.123717e-24 7.028320e-16 1.546230e-15 3.359220e-08 4.149625e-08 1.393950e-15 1.235294 above 4.440534e-08 3.176819e-08 None

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