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Tools for working FASTQ files from sequencers (R1/R2/I1/I2)

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fastq_set

Tools for working with groups FASTQ of files. Major functionality includes:

  • Find groups FASTQs (R1/R2/I1/I2) following Illumina filename conventions
  • Parsing flowcell information from Illumina FASTQ headers
  • High-speed FASTQ I/O (via the fastq crate), with careful validation of FASTQ correctness and good error message.
  • Containers for FASTQ read-pairs (along with index reads), providing access to 'technical' read components like cell barcode and UMI sequences.
  • Flexible read trimming inspired by cutadapt

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Tools for working FASTQ files from sequencers (R1/R2/I1/I2)

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