Sharing datasets and pipelines in the Canadian Open Neuroscience Platform

[glatard]

Project info

Sharing datasets and tools in the Canadian Open Neuroscience Platform

Title:

Sharing datasets and pipelines in the Canadian Open Neuroscience Platform

Project leads:
Tristan Glatard: @glatard
Samir Das: @samirdas
Jean-Baptiste Poline: @jbpoline

Timezone:
UTC-4

Hub: The Americas

Description:

The Canadian Open Neuroscience Platform (CONP) is a web portal and DataLad repository to share open and restricted-access datasets and tools in the neuroimaging community. Datasets are uniformly described using the Data Tags Suite (DATS), available for download through DataLad , regularly monitored using CircleCI, and searchable through the CONP web portal. The data itself remains under the control of its owners, as it can be stored in various backends including LORIS, Zenodo, the Open Science Framework, or any other backend supported by DataLad (http, ftp, etc). Tools are shared on Zenodo through the Boutiques framework.

The goal of this project is to port additional tools and pipelines to the CONP. Please join us if you would like to share your dataset, your pipeline, or just learn about the technologies!

Link to project: https://portal.conp.ca/

Mattermost handle: @tristan, @cowboy.samir, @jb

Goals for the OHBM Brainhack

Add 3 datasets and 3 tools to the CONP (1 of each per day!).

Good first issues:

CONP-PCNO/conp-dataset#336

CONP-PCNO/conp-portal#316

Skills:

The following skills would be very useful to the project. If you just want to acquire them, you're very welcome to join too!

• Interest in data or pipeline sharing
• Knowledge of popular datasets or tools
• Experience with data acquisition or processing
• Interest or experience with DATS metadata specifications
• Familiarity with DataLad
• Containerization with Docker or Singularity
• Interest in representation of metadata for description of a dataset in DATS see also this article.

Chat channel: hbmhack-conp

hbmhack-conp

Video channel: Please have a look at the Mattermost channel (pinned posts) for the URL of the video channel, or alternatively, please contact to @tristan, @cowboy.samir, @jb on Mattermost.

Image for the OHBM brainhack website

https://portal.conp.ca/static/img/conp.png

Project submission

Submission checklist

Once the issue is submitted, please check items in this list as you add under 'Additional project info'

Please include the following above (all required):

• Link to your project: could be a code repository, a shared document, etc. See here
• Include your Mattermost handle (i.e. your username). If you do not have an account, please sign up here.
• Goals for the OHBM Brainhack: describe what you want to achieve during this brainhack. See here.
• Flesh out at least 2 "good first issues": those are tasks that do not require any prior knowledge about your project, could be defined as issues in a GitHub repository, or in a shared document, cf here.
• Skills: list skills that would be particularly suitable for your project. We ask you to include at least one non-coding skill, cf. here.
• Chat channel: A link to a chat channel that will be used during the OHBM Brainhack. This can be an existing channel or a new one. We recommend using the Brainhack space on mattermost, cf. here.
• Video channel: Please create a video channel that will be used during the OHBM Brainhack and share it in your chat channel above. This can be an existing channel or a new one. For instance a jitsi meet room, cf. here.
• Provide an image of your project for the OHBM brainhack website

You can also include information about (all optional):

• Number of participants, cf. here
• Twitter-size summary of your project pitch, cf. here
• Set up a kanban board on your repository to better divide the work and keep track of things, cf here
• Project snippet for the OHBM Brainhack website, cf. here

We would like to think about how you will credit and onboard new members to your project. We recommend reading references from this section. If you'd like to share your thoughts with future project participants, you can include information about (recommended):

• Specify how will you acknowledge contributions (e.g. listing members on a contributing page).
• Provide links to onboarding documents if you have some.

[welcome]

(Image: CC-BY license, The Turing Way Community, & Scriberia. Zenodo. http://doi.org/10.5281/zenodo.3332808)
🎉 Welcome to the 2020 OHBM Hackathon! 🎉 We're really excited to have your input on this repository and welcome your idea! 💖 If you haven't done so already, please make sure you check out our Code of Conduct. Did you issue a new hackathon project? Please check if you have provided all relevant information and an image for the website.

[complexbrains]

Dear @glatard @samirdas @jbpoline

thank you very much for submitting your project, it is really exciting to have you all in this years OHBM Brainhack.

I will raise a couple of things for you to make the project easier to be reviewed if you do not mind. First having 2 good issues would be really helpful if you could add them please.

We would also happy to have a snippet from you to list your project in the OHBM Brainhack webpage https://ohbm.github.io/hackathon2020/, please.

We will also ask for you to indicate the time zone and hub for your project given it will be associated with the regarding managerial and participant groups.

Also in order to make the search easier, atm we change the Mattermost channel names of the existing/submitted projects with a hbmhack- prefix just for during the Brainhack days, then you can change it back to the original version for sure. So if you do not mind making such changes that would be helpful for many we believe.

Once that information completed we will run the review and add your project to the website!

We look forward to hearing from you!

[glatard]

hi @ohbm/project-monitors: My project is ready!

[complexbrains]

Dear @glatard, would you mind checking the link of your Mattermost channel please? It might be either broken or private channel which does not allow non-members to join at the moment. If it is a private channel, then we will need admin rights to convert it to the public channel so please do let us immediately so we can help you with.

Once you are done with that, would you also mind creating and sharing the link of your video link in your Mattermost channel please. Once all those are completed, give us a shout then we will complete the revision and you will be ready to go. Thank you 🤗

[glatard]

Hi @complexbrains, thanks for catching this! The channel was public but the link was wrong: we had renamed the channel from conp to hbmhack-conp but the link with hbmhack-conp doesn't seem to work. I changed the link to conp now.

[complexbrains]

Dear @glatard Thank you very much for letting us know. Your project looks ready to go! Please also do not forget to share the link to your video chat room in your Mattermost channel. Welcome aboard! 🤗 🎊

[complexbrains]

Oh, you already have done that! Thank you all set now! 🤗

[cmaumet]

Hey @glatard @jbpoline! Thanks a lot for your project. Unless I am mistaken, In think that you both are not registered yet to the event. Can you please register soon as possible? Thank you!

[glatard]

Hi @cmaumet, I registered on June 13th, is there anything wrong with my registration?

[cmaumet]

I think the first form is missing: https://framaforms.org/registration-for-ohbm-brainhack-step-12-1589173979.

[glatard]

ok, sorry, I submitted the form.

[jbpoline]

So did I, and even paid :)

…

On Mon, Jun 15, 2020 at 4:56 PM Tristan Glatard ***@***.***> wrote: ok, sorry, I submitted the form. — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#194 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AACDE2FODCJQDVDAWMS2JHTRW2DGFANCNFSM4N5GK3LA> .