Creating a dashboard and recommender system for CONP DataLad datasets and Boutiques pipelines

[mandana-mazaheri]

Project info

Creating a dashboard and recommender system for CONP DataLad datasets and Boutiques pipelines

Title:
Creating a dashboard and recommender system for CONP DataLad datasets and Boutiques pipelines

Project leads:
Mandana Mazaheri: @mandana-mazaheri
Aida Vahdani: @Aidavhd
Saman Soltani: @samansoltani

[Timezone]
UTC-4

Hub:
The Americas

Description:
Our ultimate goal is to implement a dashboard and recommender system for Boutiques pipelines and DataLad datasets, in the context of the Canadian Open Neuroscience Platform (CONP). In this project we will focus on implementing a database to track information on pipelines, datasets and available execution records. Using this database, we will extract useful information for this recommendation system.

Link to project: https://github.com/mandana-mazaheri/CONP-recommender

Mattermost handle:
@Mandana_mazaheri , @aida , @samsoltan

Goals for the OHBM Brainhack:
Create execution examples for CONP pipelines on CONP datasets.
Run and debug these examples
Publish the resulting execution records to Zenodo

Good first issues:

1. Download a CONP dataset.
2. Run a Boutiques pipeline on a CONP dataset.

Skills:

• Experience or interest in data analysis
• Familiarity with DataLad
• Familiarity with Boutiques
• Interest in execution provenance
• Familiarity with Python
• Familiarity with databases

Chat channel:

https://mattermost.brainhack.org/brainhack/channels/hbm-conp-recommender

Video channel:
Please have a look at the Mattermost channel (pinned posts) for the URL of the video channel, or alternatively, please contact to @Mandana_mazaheri , @aida , @samsoltan on Mattermost.

Image for the OHBM brainhack website

Project submission

Submission checklist

Once the issue is submitted, please check items in this list as you add under 'Additional project info'

Mandana Mazaheri, [13.06.20 20:00]
Please include the following above (all required):

• Link to your project: could be a code repository, a shared document, etc. See here
• Include your Mattermost handle (i.e. your username). If you do not have an account, please sign up here.
• Goals for the OHBM Brainhack: describe what you want to achieve during this brainhack. See here.
• Flesh out at least 2 "good first issues": those are tasks that do not require any prior knowledge about your project, could be defined as issues in a GitHub repository, or in a shared document, cf here.
• Skills: list skills that would be particularly suitable for your project. We ask you to include at least one non-coding skill, cf. here.
• Chat channel: A link to a chat channel that will be used during the OHBM Brainhack. This can be an existing channel or a new one. We recommend using the Brainhack space on mattermost, cf. here.
• Video channel: Please create a video channel that will be used during the OHBM Brainhack and share it in your chat channel above. This can be an existing channel or a new one. For instance a jitsi meet room, cf. here.
• Provide an image of your project for the OHBM brainhack website

You can also include information about (all optional):

• Number of participants, cf. here
• Twitter-size summary of your project pitch, cf. here
• Set up a kanban board on your repository to better divide the work and keep track of things, cf here
• Project snippet for the OHBM Brainhack website, cf. here

We would like to think about how you will credit and onboard new members to your project. We recommend reading references from this section. If you'd like to share your thoughts with future project participants, you can include information about (recommended):

• Specify how will you acknowledge contributions (e.g. listing members on a contributing page).
• Provide links to onboarding documents if you have some.

[welcome]

(Image: CC-BY license, The Turing Way Community, & Scriberia. Zenodo. http://doi.org/10.5281/zenodo.3332808)
🎉 Welcome to the 2020 OHBM Hackathon! 🎉 We're really excited to have your input on this repository and welcome your idea! 💖 If you haven't done so already, please make sure you check out our Code of Conduct. Did you issue a new hackathon project? Please check if you have provided all relevant information and an image for the website.

[DorienHuijser]

Hi @mandana-mazaheri, is there an image that you would like to display with your project on the hackathon website? If so, let me know. Thanks!

[mandana-mazaheri]

Hi Dorien, Yes, I uploaded a link for this image in the issue. Thank you for your assistance. Best regards

…

On Sun, Jun 14, 2020 at 7:01 AM Dorien Huijser ***@***.***> wrote: Hi @mandana-mazaheri <https://github.com/mandana-mazaheri>, is there an image that you would like to display with your project on the hackathon website <https://ohbm.github.io/hackathon2020/hackathon/>? If so, let me know. Thanks! — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#197 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ALDYXF5EIWIUSQKOKB3PFYDRWSUX3ANCNFSM4N5HNKPA> .

[jhlegarreta]

Yes, I uploaded a link for this image in the issue. Thank you for your
assistance.

@mandana-mazaheri thanks for doing this. @glatard 's #194 project does also use the same CONP image. Are you both @glatard and @mandana-mazaheri with this or any of you willing to suggest some edition to your images so that they can better identify your projects?

[glatard]

@mandana-mazaheri it would be nice to use another image, maybe you could find something more specific about recommender systems? #194 is a broader CONP project and I think we should keep the logo there.

[mandana-mazaheri]

Sure, I will change that, thank you.

…

On Sun., Jun. 14, 2020, 12:00 p.m. Tristan Glatard ***@***.***> wrote: @mandana-mazaheri <https://github.com/mandana-mazaheri> it would be nice to use another image, maybe you could find something more specific about recommender systems? #194 <#194> is a broader CONP project and I think we should keep the logo there. — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#197 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ALDYXFY62BX54HQKO6I7EALRWTXZJANCNFSM4N5HNKPA> .

[complexbrains]

Dear @mandana-mazaheri would you mind creating and sharing a video chat link for your project in your Mattermost channel by pinning it to the channel please?

Once you are done with that, please do let us know, then we will complete the revision and you will be ready to go! Thank you 🤗

[mandana-mazaheri]

Dear Isil, The link is added to our Mattermost channel, and here is this. However, we do not know when to schadule that, now we set ot for 10 AM on tomorrow. https://us04web.zoom.us/j/9674734069?pwd=Y001SEFJM0FMeG1Bd1VPaDM0dHg2UT09

…

On Mon, Jun 15, 2020 at 8:34 AM Isil Bilgin ***@***.***> wrote: Dear @mandana-mazaheri <https://github.com/mandana-mazaheri> would you mind creating and sharing a video chat link for your project in your Mattermost channel by pinning it to the channel please? Once you are done with that, please do let us know, then we will complete the revision and you will be ready to go! Thank you 🤗 — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#197 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ALDYXF7CM7LEJOWD4IPOYO3RWYILPANCNFSM4N5HNKPA> .

[complexbrains]

Dear @mandana-mazaheri thank you so much for adding that! Sorry for the late reply! Your project seems ready to go! Welcome aboard! 🤗 🎊

[mandana-mazaheri]

Sounds perfect, thank you so much

…

On Tue., Jun. 16, 2020, 2:44 a.m. Isil Bilgin ***@***.***> wrote: Dear @mandana-mazaheri <https://github.com/mandana-mazaheri> thank you so much for adding that! Sorry for the late reply! Your project seems ready to go! Welcome aboard! 🤗 🎊 — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#197 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ALDYXFYOZ776M4YR7NYWPKTRW4IGBANCNFSM4N5HNKPA> .