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  1. cellar cellar Public

    Interactive software tool for the assignment of cell types in single-cell studies.

    Python 31 7

  2. grinch grinch Public

    A library for differential expression and gene set enrichment analysis based on hydra and pydantic.

    Python 3

  3. phenotype-cover phenotype-cover Public

    A package for biomarker selection based on multiset multicover and the cross-entropy-method.

    Python 3

  4. multiset-multicover multiset-multicover Public

    Multiset multicover using the extended greedy cover algorithm implemented in C++ and exposed to Python.

    C++ 5

  5. ConstrainedKMeans ConstrainedKMeans Public

    Constrained KMeans algorithm.

    Python 7

  6. Truffle Truffle Public

    Trajectory Inference of clinical data via Multi-commodity Flow

    Jupyter Notebook 1