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Issues: BenLangmead/bowtie2
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Alignment performance decreases with higher
-p
option value
#478
opened May 23, 2024 by
LawrenceLiu023
Error, fewer reads in file specified with -1 than in file specified with -2
#472
opened Apr 23, 2024 by
abulislam
paired-end reads align receive different when swap R1 with R2
#466
opened Feb 23, 2024 by
JBSScience
-p/--threads option always uses 1 more thread than is specified.
#465
opened Feb 15, 2024 by
leowill01
bowtie2 with lower level of alignment when I align an assembly produced by two assemblers
#464
opened Feb 13, 2024 by
ksc289
Linear memory consumption growth (with time) while aligning wgbs data using Bowtie2 >= 2.5.0
#453
opened Nov 14, 2023 by
iromeo
Paired-end bowtie2-align 2.5.2 crash when R2 fastq reads have been trimmed to zero length
#451
opened Nov 7, 2023 by
cnluzon
feature request: optional non-random selection among multiple best alignments
#450
opened Oct 17, 2023 by
eboyden
Different alignments in concatenated input vs comma-separated input
#443
opened Aug 9, 2023 by
jayrbolton
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