Extend OMIM check to look for ancestors rather than only direct parents #6466
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@twhetzel I have now assigned this PR to @sabrinatoro for triage, as there is quite a bit of manual curation involved into fixing it. @sabrinatoro you let us know if you need help with this! As a reminder, this is the implementation of the following proposition: We do not want to have one OMIM turn subclass of another OMIM term unless this is specifically reviewed and approved. Before this PR, we only checked cases where the direct parent of an OMIM disease was an OMIM disease. This PR increases the severity of this checking by checking cases where an OMIM disease has an ancestor that is an OMIM disease. |
| @@ -11,7 +11,7 @@ prefix mondoSparqlQcMondo: <http://purl.obolibrary.org/obo/mondo/sparql/qc/mondo | |||
| prefix mondoPatterns: <http://purl.obolibrary.org/obo/mondo/patterns/> | |||
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| SELECT DISTINCT ?entity ?property ?value WHERE { | |||
| ?entity rdfs:subClassOf ?parent . | |||
| ?entity rdfs:subClassOf+ ?parent . | |||
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Nico said:
This PR increases the severity of this checking by checking cases where an OMIM disease has an ancestor that is an OMIM disease.
LGTM!
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