Skip to content

Biomedical Plant Disease Gold Standard Corpus Dataset For Named Entity Recognition From NCBI

Notifications You must be signed in to change notification settings

Dimas263/NLP_NER_Dataset_Biomedical_Plant-Disease_Corpus

Repository files navigation

NER Plant-Disease Dataset

Slamet Riyanto S.Kom., M.M.S.I.

Dimas Dwi Putra

Original

Annotated

"Studies on magnesium's mechanism of action in <ENAMEX TYPE="plant">digitalis</ENAMEX> -induced <ENAMEX TYPE="disease">arrhythmias</ENAMEX> ."

B-I-O

studies	O
on	O
magnesium s	O
mechanism	O
of	O
action	O
in	O
digitalis	B-plant
induced	O
arrhythmias	B-disease

Json

{
  "id": 447, 
  "text": "studies on magnesium s mechanism of action in digitalis induced arrhythmias", 
  "labels": [
    ["T0", "plant", 46, 55, "digitalis"], 
    ["T1", "disease", 64, 75, "arrhythmias"]
  ]
}

Excel / CSV + NLTK POS Tagging

Sentence # Word POS Tag
Sentence: 0 studies NNS O
Sentence: 0 on IN O
Sentence: 0 magnesium NN O
Sentence: 0 s NN O
Sentence: 0 mechanism NN O
Sentence: 0 of IN O
Sentence: 0 action NN O
Sentence: 0 in IN O
Sentence: 0 digitalis NN B-plant
Sentence: 0 induced VBD O
Sentence: 0 arrhythmias NNS B-disease

Other Content

Websites Prediction

Named Entity Recognition (NER)

Relation Extraction (RE)