Singularity error #117
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I also tried this: singularity run -B /athena/namlab/scratch/sam4032/BCR /athena/namlab/scratch/sam4032/BCR/sc-dandelion_latest.sif dandelion-preprocess Again error of directory to fasta file |
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Hi Kelvin,
I am running my Singularity again, but I get this error:
Formating fasta(s) : 0it [00:00, ?it/s]
Assigning genes : 0it [00:00, ?it/s]
Processing data file(s) : 0it [00:00, ?it/s]
Traceback (most recent call last):
File "/share/dandelion_preprocess.py", line 177, in
main()
File "/share/dandelion_preprocess.py", line 144, in main
ddl.pp.reassign_alleles(samples,
File "/opt/conda/envs/sc-dandelion-container/lib/python3.9/site-packages/dandelion/preprocessing/_preprocessing.py", line 1275, in reassign_alleles
] + [filepathlist_heavy[0]] + ['>'] + [
IndexError: list index out of range
Is there any way that I can remove this error? What can be the problem?
Thanks,
Sara
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