diff --git a/container/sc-dandelion.def b/container/sc-dandelion.def index e53d3e1a3..300dd1c3f 100644 --- a/container/sc-dandelion.def +++ b/container/sc-dandelion.def @@ -2,7 +2,12 @@ Bootstrap: docker From: ubuntu:latest -%files +%setup + if [! /share ]; then + mkdir -p /share; + fi + +%files environment.yml /environment.yml scripts/setup_mamba.sh /share/setup_mamba.sh scripts/dandelion_preprocess.py /share/dandelion_preprocess.py diff --git a/container/sc-dandelion_remote.def b/container/sc-dandelion_remote.def index 572b49db4..4447d88f3 100644 --- a/container/sc-dandelion_remote.def +++ b/container/sc-dandelion_remote.def @@ -1,7 +1,12 @@ Bootstrap: docker From: ubuntu:latest - + +%setup + if [! /share ]; then + mkdir -p /share; + fi + %files dandelion/container/environment.yml /environment.yml dandelion/container/scripts/setup_mamba.sh /share/setup_mamba.sh diff --git a/container/sc-dandelion_test.def b/container/sc-dandelion_test.def index b6ca28d58..65a0baab1 100644 --- a/container/sc-dandelion_test.def +++ b/container/sc-dandelion_test.def @@ -2,6 +2,11 @@ Bootstrap: docker From: ubuntu:latest +%setup + if [! /share ]; then + mkdir -p /share; + fi + %files environment_test.yml /environment.yml scripts/setup_mamba.sh /share/setup_mamba.sh