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I split a large bcf (bcftools view) and converted each shard to a gds. I am now trying to merge the shards back together but not all of the smaller gds will merge. Occasionally I get this error
Error in .append_node_variant(gfile, "position", "int32", storage.option, :
Invalid number of variants in 'position'.
Calls: seqMerge -> .append_node_variant
I have been careful to not split near variant positions. Any ideas? Thanks.
The text was updated successfully, but these errors were encountered:
Not sure what the issue is.
Did you split the bcf file by variants or samples?
If the variants are split, then seqMerge() could just simply concatenate the data.
Also, show me the session information: sessionInfo().
I split a large bcf (bcftools view) and converted each shard to a gds. I am now trying to merge the shards back together but not all of the smaller gds will merge. Occasionally I get this error
Error in .append_node_variant(gfile, "position", "int32", storage.option, :
Invalid number of variants in 'position'.
Calls: seqMerge -> .append_node_variant
I have been careful to not split near variant positions. Any ideas? Thanks.
The text was updated successfully, but these errors were encountered: