Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Can I Use ComBat-Seq to adjust multigroups RNAseq? #28

Open
yirenheihei opened this issue Aug 11, 2021 · 0 comments
Open

Can I Use ComBat-Seq to adjust multigroups RNAseq? #28

yirenheihei opened this issue Aug 11, 2021 · 0 comments

Comments

@yirenheihei
Copy link

hi,I am confused to use the combat_seq to deal with my RNAseq data .I have two batchs and I have thress groups such as groupA vs groupB,groupA vs groupC.How I use the combat_seq?
below is my code .
group=c(rep(0,1,2),6)
batch=c(rep(0,1),9)
adjusted_counts=combat_seq(counts,batch=batch,group=group)
is this right?
thank you very much.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant