{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":716540009,"defaultBranch":"main","name":"HapHiC","ownerLogin":"zengxiaofei","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-11-09T10:54:31.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/22426230?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1699527272.319934","currentOid":""},"activityList":{"items":[{"before":"4d78c6af64850d72577f1d56fab0a969447aa460","after":"9da55320f240fce4fa01c3a06271f7f696ed3b79","ref":"refs/heads/main","pushedAt":"2024-05-31T13:51:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zengxiaofei","name":"Xiaofei Zeng","path":"/zengxiaofei","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22426230?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"b179353efc1f7999ccb70260c4e8a46606113e46","after":"4d78c6af64850d72577f1d56fab0a969447aa460","ref":"refs/heads/main","pushedAt":"2024-05-20T09:19:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zengxiaofei","name":"Xiaofei Zeng","path":"/zengxiaofei","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22426230?s=80&v=4"},"commit":{"message":"Fix two bugs in parsing ultra-long reads","shortMessageHtmlLink":"Fix two bugs in parsing ultra-long reads"}},{"before":"1f2f4ba058e8498df863bfcad3a4aa862e96960f","after":"b179353efc1f7999ccb70260c4e8a46606113e46","ref":"refs/heads/main","pushedAt":"2024-05-17T11:41:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zengxiaofei","name":"Xiaofei Zeng","path":"/zengxiaofei","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22426230?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"e410eeaf5ef612c1d5faa8943af6a65ea70c4f2c","after":"1f2f4ba058e8498df863bfcad3a4aa862e96960f","ref":"refs/heads/main","pushedAt":"2024-05-16T09:28:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zengxiaofei","name":"Xiaofei Zeng","path":"/zengxiaofei","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22426230?s=80&v=4"},"commit":{"message":"Fixed a bug in filtering ultra-long read alignments","shortMessageHtmlLink":"Fixed a bug in filtering ultra-long read alignments"}},{"before":"cedeb1f943e35b8d7b4987379fa1e642f908319e","after":"e410eeaf5ef612c1d5faa8943af6a65ea70c4f2c","ref":"refs/heads/main","pushedAt":"2024-05-15T04:32:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zengxiaofei","name":"Xiaofei Zeng","path":"/zengxiaofei","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22426230?s=80&v=4"},"commit":{"message":"Use the distribution function in importlib.metadata for dependency checking","shortMessageHtmlLink":"Use the distribution function in importlib.metadata for dependency ch…"}},{"before":"fb04ae917e1d00bab80c45bd18e7c6fa44138cac","after":"cedeb1f943e35b8d7b4987379fa1e642f908319e","ref":"refs/heads/main","pushedAt":"2024-05-08T08:51:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zengxiaofei","name":"Xiaofei Zeng","path":"/zengxiaofei","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22426230?s=80&v=4"},"commit":{"message":"Add a script to support Pore-C data (minimap2)","shortMessageHtmlLink":"Add a script to support Pore-C data (minimap2)"}},{"before":"7c3ec8df29ff6cb32be37ed3e225dabe947e9640","after":"fb04ae917e1d00bab80c45bd18e7c6fa44138cac","ref":"refs/heads/main","pushedAt":"2024-05-08T03:13:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zengxiaofei","name":"Xiaofei Zeng","path":"/zengxiaofei","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22426230?s=80&v=4"},"commit":{"message":"Improve performance for prepare_paired_bam_falign.py","shortMessageHtmlLink":"Improve performance for prepare_paired_bam_falign.py"}},{"before":"436fac929a40ce0b8f2e869cf95e75b415692827","after":"7c3ec8df29ff6cb32be37ed3e225dabe947e9640","ref":"refs/heads/main","pushedAt":"2024-05-07T01:39:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zengxiaofei","name":"Xiaofei Zeng","path":"/zengxiaofei","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22426230?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"5e137b5e09c0c776531602473d52b5a0da48dd46","after":"436fac929a40ce0b8f2e869cf95e75b415692827","ref":"refs/heads/main","pushedAt":"2024-05-06T06:58:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zengxiaofei","name":"Xiaofei Zeng","path":"/zengxiaofei","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22426230?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"c56c6487bc3cd8d29cd3ffee91f39082f89609b6","after":"5e137b5e09c0c776531602473d52b5a0da48dd46","ref":"refs/heads/main","pushedAt":"2024-05-06T06:54:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zengxiaofei","name":"Xiaofei Zeng","path":"/zengxiaofei","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22426230?s=80&v=4"},"commit":{"message":"Add the 'haphic check' command for dependency checking","shortMessageHtmlLink":"Add the 'haphic check' command for dependency checking"}},{"before":"e5c8cb143faaeba956844e98b1038370caed6df5","after":"c56c6487bc3cd8d29cd3ffee91f39082f89609b6","ref":"refs/heads/main","pushedAt":"2024-05-06T04:33:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zengxiaofei","name":"Xiaofei Zeng","path":"/zengxiaofei","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22426230?s=80&v=4"},"commit":{"message":"Add support for higher version of scikit-learn","shortMessageHtmlLink":"Add support for higher version of scikit-learn"}},{"before":"f9afa9763c560fefb04f1eb01b94fc59a52bbcaa","after":"e5c8cb143faaeba956844e98b1038370caed6df5","ref":"refs/heads/main","pushedAt":"2024-05-01T03:08:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zengxiaofei","name":"Xiaofei Zeng","path":"/zengxiaofei","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22426230?s=80&v=4"},"commit":{"message":"Add a script to support Pore-C data (falign)","shortMessageHtmlLink":"Add a script to support Pore-C data (falign)"}},{"before":"f3fa74d3383c932935e761ffdc489e7e81cc9def","after":"f9afa9763c560fefb04f1eb01b94fc59a52bbcaa","ref":"refs/heads/main","pushedAt":"2024-04-24T06:26:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zengxiaofei","name":"Xiaofei Zeng","path":"/zengxiaofei","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22426230?s=80&v=4"},"commit":{"message":"Add support for ultra-long reads; add a script for result statistics for more general purpose","shortMessageHtmlLink":"Add support for ultra-long reads; add a script for result statistics …"}},{"before":"870659d5b79f2a33dc2a7ba59b769294dc75daf2","after":"f3fa74d3383c932935e761ffdc489e7e81cc9def","ref":"refs/heads/main","pushedAt":"2024-04-19T08:46:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zengxiaofei","name":"Xiaofei Zeng","path":"/zengxiaofei","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22426230?s=80&v=4"},"commit":{"message":"Avoid printing unecessary messages","shortMessageHtmlLink":"Avoid printing unecessary messages"}},{"before":"fb4bab10d49b7de9fb947293ba474df520d8aef4","after":"870659d5b79f2a33dc2a7ba59b769294dc75daf2","ref":"refs/heads/main","pushedAt":"2024-04-18T02:47:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zengxiaofei","name":"Xiaofei Zeng","path":"/zengxiaofei","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22426230?s=80&v=4"},"commit":{"message":"Fix some bugs in haphic reassign; add the --no_additional_rescue parameter; fix a bug in evaluate_scaffolds.py; add a script for mocking gfa files","shortMessageHtmlLink":"Fix some bugs in haphic reassign; add the --no_additional_rescue para…"}},{"before":"3c89447eb813ad5250287552f0fe5cfda2e2522f","after":"fb4bab10d49b7de9fb947293ba474df520d8aef4","ref":"refs/heads/main","pushedAt":"2024-03-26T01:30:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zengxiaofei","name":"Xiaofei Zeng","path":"/zengxiaofei","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22426230?s=80&v=4"},"commit":{"message":"Add a script for FASTQ length filtering & modify README.md","shortMessageHtmlLink":"Add a script for FASTQ length filtering & modify README.md"}},{"before":"2410e3359e4f738bb83389b82b7f90b0dfc01e23","after":"3c89447eb813ad5250287552f0fe5cfda2e2522f","ref":"refs/heads/main","pushedAt":"2024-03-21T04:06:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zengxiaofei","name":"Xiaofei Zeng","path":"/zengxiaofei","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22426230?s=80&v=4"},"commit":{"message":"Revise README.md","shortMessageHtmlLink":"Revise README.md"}},{"before":"ee77015b7e1f91bb5948587448801bfc60bd9d41","after":"2410e3359e4f738bb83389b82b7f90b0dfc01e23","ref":"refs/heads/main","pushedAt":"2024-03-21T03:37:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zengxiaofei","name":"Xiaofei Zeng","path":"/zengxiaofei","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22426230?s=80&v=4"},"commit":{"message":"Revise README.md","shortMessageHtmlLink":"Revise README.md"}},{"before":"8d7035a25b9d8a57ab1ee61acdca0931e9c6cdad","after":"ee77015b7e1f91bb5948587448801bfc60bd9d41","ref":"refs/heads/main","pushedAt":"2024-03-21T03:35:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zengxiaofei","name":"Xiaofei Zeng","path":"/zengxiaofei","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22426230?s=80&v=4"},"commit":{"message":"Add support for pairs format used in chromap","shortMessageHtmlLink":"Add support for pairs format used in chromap"}},{"before":"fe30bf4c266be44de4dbba26eb5d3b9969145db4","after":"8d7035a25b9d8a57ab1ee61acdca0931e9c6cdad","ref":"refs/heads/main","pushedAt":"2024-03-20T03:56:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zengxiaofei","name":"Xiaofei Zeng","path":"/zengxiaofei","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22426230?s=80&v=4"},"commit":{"message":"Fix two bugs in haphic plot","shortMessageHtmlLink":"Fix two bugs in haphic plot"}},{"before":"035634853825c40ec20d2e92792e3ee645b5c441","after":"fe30bf4c266be44de4dbba26eb5d3b9969145db4","ref":"refs/heads/main","pushedAt":"2024-03-19T07:30:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zengxiaofei","name":"Xiaofei Zeng","path":"/zengxiaofei","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22426230?s=80&v=4"},"commit":{"message":"Add scripts for simulation experiments","shortMessageHtmlLink":"Add scripts for simulation experiments"}},{"before":"a586ced6a0d9dfce57f6f129b37a9001bcaa2b11","after":"035634853825c40ec20d2e92792e3ee645b5c441","ref":"refs/heads/main","pushedAt":"2024-03-09T07:42:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zengxiaofei","name":"Xiaofei Zeng","path":"/zengxiaofei","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22426230?s=80&v=4"},"commit":{"message":"Revise README.md","shortMessageHtmlLink":"Revise README.md"}},{"before":"629e6bc579b18ab9ff92407379d57b29e3cb8b28","after":"a586ced6a0d9dfce57f6f129b37a9001bcaa2b11","ref":"refs/heads/main","pushedAt":"2024-02-04T05:24:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zengxiaofei","name":"Xiaofei Zeng","path":"/zengxiaofei","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22426230?s=80&v=4"},"commit":{"message":"Speed up --remove_allelic_links","shortMessageHtmlLink":"Speed up --remove_allelic_links"}},{"before":"1f63eaab0f854f902bceda302ed47973d786a830","after":"629e6bc579b18ab9ff92407379d57b29e3cb8b28","ref":"refs/heads/main","pushedAt":"2024-01-18T09:07:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zengxiaofei","name":"Xiaofei Zeng","path":"/zengxiaofei","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22426230?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"e9d9b1f6e592b66699e8f8113f1d66b36a97304b","after":"1f63eaab0f854f902bceda302ed47973d786a830","ref":"refs/heads/main","pushedAt":"2024-01-18T09:05:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zengxiaofei","name":"Xiaofei Zeng","path":"/zengxiaofei","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22426230?s=80&v=4"},"commit":{"message":"Add a parameter for filter_bam.py; Add a rust version of filter_bam.py","shortMessageHtmlLink":"Add a parameter for filter_bam.py; Add a rust version of filter_bam.py"}},{"before":"a7408399c517d920ba89702b3d1d99fc8f7ac2b3","after":"e9d9b1f6e592b66699e8f8113f1d66b36a97304b","ref":"refs/heads/main","pushedAt":"2023-12-26T12:45:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zengxiaofei","name":"Xiaofei Zeng","path":"/zengxiaofei","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22426230?s=80&v=4"},"commit":{"message":"Back to default interpolation to avoid misplacement of borderlines","shortMessageHtmlLink":"Back to default interpolation to avoid misplacement of borderlines"}},{"before":"f617dc3fe832a24fe690cff3da3f06e02e2c6fec","after":"a7408399c517d920ba89702b3d1d99fc8f7ac2b3","ref":"refs/heads/main","pushedAt":"2023-12-16T03:19:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zengxiaofei","name":"Xiaofei Zeng","path":"/zengxiaofei","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22426230?s=80&v=4"},"commit":{"message":"Fix a bug in generating corrected_ctgs.txt","shortMessageHtmlLink":"Fix a bug in generating corrected_ctgs.txt"}},{"before":"129f1ad458d6dbb350cb4f37bc714413b95a14fb","after":"f617dc3fe832a24fe690cff3da3f06e02e2c6fec","ref":"refs/heads/main","pushedAt":"2023-12-15T01:40:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zengxiaofei","name":"Xiaofei Zeng","path":"/zengxiaofei","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22426230?s=80&v=4"},"commit":{"message":"Add a new parameter --manual_vmax for haphic plot","shortMessageHtmlLink":"Add a new parameter --manual_vmax for haphic plot"}},{"before":"69896c46ecf2455dba10cfabe94315bb4637f868","after":"129f1ad458d6dbb350cb4f37bc714413b95a14fb","ref":"refs/heads/main","pushedAt":"2023-12-14T16:31:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zengxiaofei","name":"Xiaofei Zeng","path":"/zengxiaofei","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22426230?s=80&v=4"},"commit":{"message":"Fix a bug in drawing xticks for haphic plot","shortMessageHtmlLink":"Fix a bug in drawing xticks for haphic plot"}},{"before":"31023a33e569c2ed87f075a17aa1d33a86751aed","after":"69896c46ecf2455dba10cfabe94315bb4637f868","ref":"refs/heads/main","pushedAt":"2023-12-10T03:02:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zengxiaofei","name":"Xiaofei Zeng","path":"/zengxiaofei","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22426230?s=80&v=4"},"commit":{"message":"Use for imshow()","shortMessageHtmlLink":"Use for imshow()"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEWRQPCAA","startCursor":null,"endCursor":null}},"title":"Activity · zengxiaofei/HapHiC"}